Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_H18
(520 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24464|CP4A8_RAT Cytochrome P450 4A8 (CYPIVA8) (P450-KP1... 29 5.9
sp|P49953|WT1_SMIMA Wilms' tumor protein 29 7.7
>sp|P24464|CP4A8_RAT Cytochrome P450 4A8 (CYPIVA8) (P450-KP1) (P450-PP1)
Length = 508
Score = 29.3 bits (64), Expect = 5.9
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Frame = +2
Query: 209 VFMFSVANIFWQH------MSNGNVPHNAIVGGHTSSNEPLYVARARVQGEMCVGKVCQS 370
+F F V N+F Q+ SNG HNA H +++ + +A++Q E + KV Q
Sbjct: 225 LFFFRVQNMFHQNDFIYSLSSNGRKAHNAWQLAHDYTDQVIKSRKAQLQDEEELQKVKQK 284
Query: 371 HGCAFM 388
F+
Sbjct: 285 RRLDFL 290
>sp|P49953|WT1_SMIMA Wilms' tumor protein
Length = 239
Score = 28.9 bits (63), Expect = 7.7
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +1
Query: 19 GNQDNMDKVPYNAIQADPGLYILRCRTGGDLTIGKAKTGHSTGFFPYAGREDTIPNYEVL 198
G+Q + + PYN+ L C T + +G GH+TG Y T P +L
Sbjct: 18 GSQALLLRTPYNSDNLYQMTSQLECMTWNQMNLGATLKGHTTG---YENDNHTTP---IL 71
Query: 199 CDTGFHV 219
C + +
Sbjct: 72 CGAQYRI 78
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,233,190
Number of Sequences: 369166
Number of extensions: 1464151
Number of successful extensions: 3284
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3284
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3403581975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)