Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_A04
(423 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52593|NU188_YEAST Nucleoporin NUP188 (Nuclear pore prot... 30 1.6
sp|Q7M523|1A1D_WILSA 1-aminocyclopropane-1-carboxylate deam... 30 1.6
sp|Q9Y7K2|TOR2_SCHPO Phosphatidylinositol 3-kinase tor2 (PI... 30 1.6
sp|O14356|TOR1_SCHPO Phosphatidylinositol 3-kinase tor1 (PI... 30 2.1
sp|P35169|TOR1_YEAST Phosphatidylinositol 3-kinase TOR1 (PI... 30 2.7
sp|Q9M3G7|ATM_ARATH Serine-protein kinase ATM (Ataxia telan... 29 3.5
sp|O70554|SP2B_MOUSE Small proline-rich protein 2B 29 4.6
sp|Q12864|CAD17_HUMAN Cadherin-17 precursor (Liver-intestin... 29 4.6
sp|P08233|VG38_BPOX2 Receptor recognizing protein (Protein ... 28 6.0
sp|Q646L1|MATK_PLETI Maturase K (Intron maturase) 28 6.0
>sp|P52593|NU188_YEAST Nucleoporin NUP188 (Nuclear pore protein NUP188)
Length = 1655
Score = 30.4 bits (67), Expect = 1.6
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -2
Query: 278 VIDRLCRHTFHLEHELLQRKDVHYWKYDLRL*HYEVHFHLTCVAKNVRH 132
+I++L H H+ + + WKY+ L +E+ FHLT + +V H
Sbjct: 738 IINKLILHAIHIF------ESYYNWKYNNFLQKFEIAFHLTLIFYDVLH 780
>sp|Q7M523|1A1D_WILSA 1-aminocyclopropane-1-carboxylate deaminase (ACC deaminase) (ACCD)
Length = 341
Score = 30.4 bits (67), Expect = 1.6
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +2
Query: 65 YAGREDTIPNYEVLCDTGLHVFGG------EHFWQHMSNGNGPHNAIVGGHTSSNERLYV 226
YA RED C++GL FGG E+ + G+ H +GG S+ R+
Sbjct: 35 YAKRED--------CNSGL-AFGGNKLRKLEYIVPDIVEGDYTHLVSIGGRQSNQTRMVA 85
Query: 227 ARARVQGEMCV 259
A A G+ CV
Sbjct: 86 ALAAKLGKKCV 96
>sp|Q9Y7K2|TOR2_SCHPO Phosphatidylinositol 3-kinase tor2 (PI3-kinase) (PtdIns-3-kinase)
(PI3K)
Length = 2337
Score = 30.4 bits (67), Expect = 1.6
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 75 EKTPFQITRYYVIRVCMFSVANIFGNTCQMEMDLIML*SEVILPVMNVFTLQELV 239
EK PF++TR V + + + F TC+ M ++ E ++ V+ F L+
Sbjct: 2175 EKIPFRLTRMLVNAMEVSGIEGTFRITCEHVMRVLRTNKESVMAVLEAFVYDPLI 2229
>sp|O14356|TOR1_SCHPO Phosphatidylinositol 3-kinase tor1 (PI3-kinase) (PtdIns-3-kinase)
(PI3K)
Length = 2335
Score = 30.0 bits (66), Expect = 2.1
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +3
Query: 75 EKTPFQITRYYVIRVCMFSVANIFGNTCQMEMDLIML*SEVILPVMNVFTLQELV 239
EK PF++TR + + + + + TC++ M ++ +E ++ V+ F L+
Sbjct: 2172 EKIPFRLTRMLINAMEVSGIQGTYKITCELVMRVLRSNTESLMAVLEAFVYDPLI 2226
>sp|P35169|TOR1_YEAST Phosphatidylinositol 3-kinase TOR1 (PI3-kinase) (PtdIns-3-kinase)
(PI3K)
Length = 2470
Score = 29.6 bits (65), Expect = 2.7
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +3
Query: 75 EKTPFQITRYYVIRVCMFSVANIFGNTCQMEMDLIML*SEVILPVMNVFTLQELV 239
EK PF++TR + + + F TC+ M ++ E ++ ++ F L L+
Sbjct: 2310 EKVPFRLTRMLTYAMEVSGIEGSFRITCENVMRVLRDNKESLMAILEAFALDPLI 2364
>sp|Q9M3G7|ATM_ARATH Serine-protein kinase ATM (Ataxia telangiectasia mutated homolog)
(AtATM)
Length = 3856
Score = 29.3 bits (64), Expect = 3.5
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +3
Query: 45 IALDSFRMLE--EKTPFQITRYYVIRVCMFSVANIFGNTCQMEMDLIML*SEVILPVMNV 218
+A + ML+ E+ PF++TR + + + V +F C+ + ++ E +L ++ V
Sbjct: 3703 VAFEQGLMLKTPERVPFRLTRDIIDGMGITGVEGVFRRCCEETLSVMRTNKEALLTIVEV 3762
Query: 219 F 221
F
Sbjct: 3763 F 3763
>sp|O70554|SP2B_MOUSE Small proline-rich protein 2B
Length = 98
Score = 28.9 bits (63), Expect = 4.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 171 PFPFDMCCQKCSPPKTCKP 115
P P +CC+ C PP C+P
Sbjct: 53 PCPPPVCCEPCPPPVCCEP 71
>sp|Q12864|CAD17_HUMAN Cadherin-17 precursor (Liver-intestine-cadherin) (LI-cadherin)
(Intestinal peptide-associated transporter HPT-1)
Length = 832
Score = 28.9 bits (63), Expect = 4.6
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 11/55 (20%)
Frame = +2
Query: 110 DTGLHVFGGEHFWQHMSNG-----------NGPHNAIVGGHTSSNERLYVARARV 241
D H+F G HF + +G NG H + HT ER YV R+
Sbjct: 692 DDDQHLFRGPHFTFSLGSGSLQNDWEVSKINGTHARLSTRHTDFEERAYVVLIRI 746
>sp|P08233|VG38_BPOX2 Receptor recognizing protein (Protein Gp38)
Length = 266
Score = 28.5 bits (62), Expect = 6.0
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Frame = +2
Query: 56 FFPYAGREDTIPNYEVLCDTGLHVFGGEHFWQHMSNGNGPH-----NAIVGGHTSSNE 214
FF Y DT Y VL ++ GG H W NG H N GGH N+
Sbjct: 93 FFMYG---DTPNEYVVL-----NIHGGVHMWGRGGNGGYTHSGGDGNGTQGGHVIQND 142
>sp|Q646L1|MATK_PLETI Maturase K (Intron maturase)
Length = 505
Score = 28.5 bits (62), Expect = 6.0
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = -2
Query: 284 SHVIDR---LCRHTFHLEHELLQRKDVHYWKYDLRL*HYEVHFHLTCVAKNVRHRKH 123
SH+IDR +CR+ H ++K ++ KY LR L+CV VR K+
Sbjct: 399 SHIIDRFVRICRNLSHYHSGSSKKKSLYRIKYILR---------LSCVKSLVRKHKN 446
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,696,004
Number of Sequences: 369166
Number of extensions: 1157512
Number of successful extensions: 2914
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2913
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2052714815
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)