Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_C09
(400 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90687|PTN11_CHICK Tyrosine-protein phosphatase, non-rec... 29 3.0
sp|P35235|PTN11_MOUSE Tyrosine-protein phosphatase, non-rec... 28 6.6
sp|Q06124|PTN11_HUMAN Tyrosine-protein phosphatase, non-rec... 28 6.6
sp|Q40381|RNS7_NICAL Ribonuclease S-7 precursor (Stylar gly... 28 8.6
sp|Q9KRA7|LFTR_VIBCH Leucyl/phenylalanyl-tRNA--protein tran... 28 8.6
sp|Q8KA75|GLMS_BUCAP Glucosamine--fructose-6-phosphate amin... 28 8.6
sp|O22466|MSI1_LYCES WD-40 repeat protein MSI1 28 8.6
sp|P34814|PYG_AGLNE Phycobilisome rod-core linker polypepti... 28 8.6
>sp|Q90687|PTN11_CHICK Tyrosine-protein phosphatase, non-receptor type 11 (cSH-PTP2)
Length = 593
Score = 29.3 bits (64), Expect = 3.0
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +3
Query: 15 SGRQAS-LSWQPGQYGQVPYNAIQADPGLYIVRCRTG---GDLTIGKAKTGH 158
SGR+A L + G++G Q+ PG +++ RTG G+ GK+K H
Sbjct: 118 SGREAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTH 169
>sp|P35235|PTN11_MOUSE Tyrosine-protein phosphatase, non-receptor type 11
(Protein-tyrosine phosphatase SYP)
Length = 585
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +3
Query: 15 SGRQAS-LSWQPGQYGQVPYNAIQADPGLYIVRCRTG---GDLTIGKAKTGH 158
SG++A L + G++G Q+ PG +++ RTG G+ GK+K H
Sbjct: 118 SGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTH 169
>sp|Q06124|PTN11_HUMAN Tyrosine-protein phosphatase, non-receptor type 11
(Protein-tyrosine phosphatase 2C) (PTP-2C) (PTP-1D)
(SH-PTP3) (SH-PTP2) (SHP-2)
Length = 593
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +3
Query: 15 SGRQAS-LSWQPGQYGQVPYNAIQADPGLYIVRCRTG---GDLTIGKAKTGH 158
SG++A L + G++G Q+ PG +++ RTG G+ GK+K H
Sbjct: 118 SGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTH 169
>sp|Q40381|RNS7_NICAL Ribonuclease S-7 precursor (Stylar glycoprotein 7) (S7-RNase)
Length = 218
Score = 27.7 bits (60), Expect = 8.6
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Frame = -1
Query: 361 FTLNTSSCNVKRFITG--SMTSDYSIMRYISIDMCCQK-------CSPPKTCKPVSHN 215
+T+ + +K+ G +++ IM + I +C C PKTCKP N
Sbjct: 156 YTVQKINSTIKKITQGYPNLSCTKGIMELVEIGICFDSMVKNVINCPHPKTCKPTGSN 213
>sp|Q9KRA7|LFTR_VIBCH Leucyl/phenylalanyl-tRNA--protein transferase (L/F-transferase)
(Leucyltransferase) (Phenyalanyltransferase)
Length = 243
Score = 27.7 bits (60), Expect = 8.6
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 66 PYNAIQADPGLYIVRCRTGGDLTIGKAKTGHSTGFFPYAGREDTI 200
P+ A+ GL GGDL + + + G FP+ G ED I
Sbjct: 18 PFTALDDPNGLLAF----GGDLRLERIWAAYQQGIFPWYGPEDPI 58
>sp|Q8KA75|GLMS_BUCAP Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]
(Hexosephosphate aminotransferase)
(D-fructose-6-phosphate amidotransferase) (GFAT)
(L-glutamine-D-fructose-6-phosphate amidotransferase)
(Glucosamine-6-phosphate synthase)
Length = 608
Score = 27.7 bits (60), Expect = 8.6
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +3
Query: 189 EDTIPNYEVLCDTG--LHVFGGEHFWQHMSMEMYLIML*SEVILPVMNLFTLQELVFKVK 362
E T N + +C G ++VF + +M + I E+I P++ + LQ L + +
Sbjct: 529 EKTKKNIKEICARGGIIYVFSDQEIDLEKNMTIIKIPYVEEIIAPILYIIPLQLLAYYIA 588
Query: 363 CVSAKSVN 386
K+++
Sbjct: 589 LSKGKNID 596
>sp|O22466|MSI1_LYCES WD-40 repeat protein MSI1
Length = 424
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 296 IVGGHTSSNEPLYVARARVQ 355
I+G HTS NEP Y+ A+VQ
Sbjct: 67 ILGTHTSENEPNYLMLAQVQ 86
>sp|P34814|PYG_AGLNE Phycobilisome rod-core linker polypeptide cpcG
Length = 236
Score = 27.7 bits (60), Expect = 8.6
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = -3
Query: 263 LPKMFATENMQTSIT*YLVIW---NGVFSSSIRKESSAMTGFCFSNSQIPSSSTADNV*A 93
LPK++ T+N+ TSI +IW +FS + SS M F S + D +
Sbjct: 28 LPKIYTTDNLPTSIEMDEIIWAAYRQIFSEH-QMLSSCMDRFLESQLRFNQIKVKDFIKG 86
Query: 92 RIGLNSIIRNLS 57
+ L+S RNL+
Sbjct: 87 LV-LSSAFRNLN 97
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,931,365
Number of Sequences: 369166
Number of extensions: 1201075
Number of successful extensions: 3352
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3340
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1708532300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)