Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_F09
(306 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90687|PTN11_CHICK Tyrosine-protein phosphatase, non-rec... 29 3.0
sp|P35235|PTN11_MOUSE Tyrosine-protein phosphatase, non-rec... 28 6.6
sp|Q06124|PTN11_HUMAN Tyrosine-protein phosphatase, non-rec... 28 6.6
sp|Q9H239|MMP28_HUMAN Matrix metalloproteinase-28 precursor... 28 8.6
sp|Q9KRA7|LFTR_VIBCH Leucyl/phenylalanyl-tRNA--protein tran... 28 8.6
sp|P34814|PYG_AGLNE Phycobilisome rod-core linker polypepti... 28 8.6
>sp|Q90687|PTN11_CHICK Tyrosine-protein phosphatase, non-receptor type 11 (cSH-PTP2)
Length = 593
Score = 29.3 bits (64), Expect = 3.0
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +1
Query: 16 SGRQAS-LSWQPGQYGQVPYNAIQADPGLYIVRCRTG---GDLTIGKAKTGH 159
SGR+A L + G++G Q+ PG +++ RTG G+ GK+K H
Sbjct: 118 SGREAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTH 169
>sp|P35235|PTN11_MOUSE Tyrosine-protein phosphatase, non-receptor type 11
(Protein-tyrosine phosphatase SYP)
Length = 585
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +1
Query: 16 SGRQAS-LSWQPGQYGQVPYNAIQADPGLYIVRCRTG---GDLTIGKAKTGH 159
SG++A L + G++G Q+ PG +++ RTG G+ GK+K H
Sbjct: 118 SGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTH 169
>sp|Q06124|PTN11_HUMAN Tyrosine-protein phosphatase, non-receptor type 11
(Protein-tyrosine phosphatase 2C) (PTP-2C) (PTP-1D)
(SH-PTP3) (SH-PTP2) (SHP-2)
Length = 593
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +1
Query: 16 SGRQAS-LSWQPGQYGQVPYNAIQADPGLYIVRCRTG---GDLTIGKAKTGH 159
SG++A L + G++G Q+ PG +++ RTG G+ GK+K H
Sbjct: 118 SGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTH 169
>sp|Q9H239|MMP28_HUMAN Matrix metalloproteinase-28 precursor (MMP-28) (Epilysin)
Length = 520
Score = 27.7 bits (60), Expect = 8.6
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 232 LHVFGGEHFWQHMSNGNV 285
L++F G HFW+ ++GNV
Sbjct: 339 LYIFKGSHFWEVAADGNV 356
>sp|Q9KRA7|LFTR_VIBCH Leucyl/phenylalanyl-tRNA--protein transferase (L/F-transferase)
(Leucyltransferase) (Phenyalanyltransferase)
Length = 243
Score = 27.7 bits (60), Expect = 8.6
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 67 PYNAIQADPGLYIVRCRTGGDLTIGKAKTGHSTGFFPYAGREDTI 201
P+ A+ GL GGDL + + + G FP+ G ED I
Sbjct: 18 PFTALDDPNGLLAF----GGDLRLERIWAAYQQGIFPWYGPEDPI 58
>sp|P34814|PYG_AGLNE Phycobilisome rod-core linker polypeptide cpcG
Length = 236
Score = 27.7 bits (60), Expect = 8.6
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = -1
Query: 264 LPKMFATENMQTSIT*YLVIW---NGVFSSSIRKESSAMTGFCFSNSQIPSSSTADNV*A 94
LPK++ T+N+ TSI +IW +FS + SS M F S + D +
Sbjct: 28 LPKIYTTDNLPTSIEMDEIIWAAYRQIFSEH-QMLSSCMDRFLESQLRFNQIKVKDFIKG 86
Query: 93 RIGLNSIIRNLS 58
+ L+S RNL+
Sbjct: 87 LV-LSSAFRNLN 97
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,797,521
Number of Sequences: 369166
Number of extensions: 908917
Number of successful extensions: 2402
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2389
length of database: 68,354,980
effective HSP length: 70
effective length of database: 55,423,530
effective search space used: 1718129430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)