Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_K06
(635 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6CJL0|SNF7_KLULA Vacuolar sorting protein SNF7 (Vacuola... 39 0.011
sp|Q6IQ73|CHM4C_BRARE Charged multivesicular body protein 4... 38 0.025
sp|Q9H444|CHM4B_HUMAN Charged multivesicular body protein 4... 36 0.072
sp|Q9D8B3|CHM4B_MOUSE Charged multivesicular body protein 4... 36 0.072
sp|Q6GNN8|CHM4C_XENLA Charged multivesicular body protein 4... 36 0.094
sp|Q5ABD0|SNF7_CANAL Vacuolar sorting protein SNF7 (Vacuola... 35 0.12
sp|Q7ZVC4|CHM4B_BRARE Charged multivesicular body protein 4... 35 0.12
sp|Q5ZHP5|CHM4B_CHICK Charged multivesicular body protein 4... 35 0.12
sp|P59074|CG301_HUMAN Hypothetical protein CGI-301 35 0.16
sp|Q6FW96|SNF7_CANGA Vacuolar sorting protein SNF7 (Vacuola... 35 0.16
>sp|Q6CJL0|SNF7_KLULA Vacuolar sorting protein SNF7 (Vacuolar protein sorting-associated
protein VPS32)
Length = 232
Score = 38.9 bits (89), Expect = 0.011
Identities = 15/29 (51%), Positives = 25/29 (86%)
Frame = -1
Query: 89 LKAMKQASTALKSSHQNMDVDKVNDILDD 3
LKAMKQ ++A+K+ H+ +D+DKV+D +D+
Sbjct: 101 LKAMKQGASAMKNIHKGLDLDKVDDTMDE 129
>sp|Q6IQ73|CHM4C_BRARE Charged multivesicular body protein 4c (Chromatin modifying protein
4c) (CHMP4c)
Length = 224
Score = 37.7 bits (86), Expect = 0.025
Identities = 15/29 (51%), Positives = 24/29 (82%)
Frame = -1
Query: 89 LKAMKQASTALKSSHQNMDVDKVNDILDD 3
LK M A+ A+K++H+NMD+DKV+D++ D
Sbjct: 104 LKNMGFAAKAMKTAHENMDIDKVDDLMQD 132
>sp|Q9H444|CHM4B_HUMAN Charged multivesicular body protein 4b (Chromatin modifying protein
4b) (CHMP4b) (Vacuolar protein sorting 7-2) (SNF7-2)
(hSnf7-2) (SNF7 homolog associated with Alix 1) (hVps32)
Length = 224
Score = 36.2 bits (82), Expect = 0.072
Identities = 14/29 (48%), Positives = 23/29 (79%)
Frame = -1
Query: 89 LKAMKQASTALKSSHQNMDVDKVNDILDD 3
LK M A+ A+K++H NMD+DKV++++ D
Sbjct: 106 LKNMGYAAKAMKAAHDNMDIDKVDELMQD 134
>sp|Q9D8B3|CHM4B_MOUSE Charged multivesicular body protein 4b (Chromatin modifying protein
4b) (CHMP4b)
Length = 224
Score = 36.2 bits (82), Expect = 0.072
Identities = 14/29 (48%), Positives = 23/29 (79%)
Frame = -1
Query: 89 LKAMKQASTALKSSHQNMDVDKVNDILDD 3
LK M A+ A+K++H NMD+DKV++++ D
Sbjct: 106 LKNMGYAAKAMKAAHDNMDIDKVDELMQD 134
>sp|Q6GNN8|CHM4C_XENLA Charged multivesicular body protein 4c (Chromatin modifying protein
4c) (CHMP4c)
Length = 227
Score = 35.8 bits (81), Expect = 0.094
Identities = 13/29 (44%), Positives = 24/29 (82%)
Frame = -1
Query: 89 LKAMKQASTALKSSHQNMDVDKVNDILDD 3
LK M A+ A+K++H+NMD++K++D++ D
Sbjct: 110 LKNMGYAAKAMKAAHENMDLEKIDDLMQD 138
>sp|Q5ABD0|SNF7_CANAL Vacuolar sorting protein SNF7 (Vacuolar protein sorting-associated
protein VPS32)
Length = 226
Score = 35.4 bits (80), Expect = 0.12
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -1
Query: 89 LKAMKQASTALKSSHQNMDVDKVNDILDD 3
+KAMKQ + A+K H DVDKV D +D+
Sbjct: 102 MKAMKQGAKAMKQIHGEYDVDKVEDTMDE 130
>sp|Q7ZVC4|CHM4B_BRARE Charged multivesicular body protein 4b (Chromatin modifying protein
4b) (CHMP4b)
Length = 220
Score = 35.4 bits (80), Expect = 0.12
Identities = 13/29 (44%), Positives = 23/29 (79%)
Frame = -1
Query: 89 LKAMKQASTALKSSHQNMDVDKVNDILDD 3
+K M A+ A+K++H NMD+DKV++++ D
Sbjct: 104 IKNMGYAAKAMKAAHDNMDIDKVDELMQD 132
>sp|Q5ZHP5|CHM4B_CHICK Charged multivesicular body protein 4b (Chromatin modifying protein
4b) (CHMP4b)
Length = 227
Score = 35.4 bits (80), Expect = 0.12
Identities = 14/29 (48%), Positives = 23/29 (79%)
Frame = -1
Query: 89 LKAMKQASTALKSSHQNMDVDKVNDILDD 3
LK M A+ A+K++H NMD+DKV++++ D
Sbjct: 108 LKNMGFAAKAMKAAHDNMDIDKVDELMQD 136
>sp|P59074|CG301_HUMAN Hypothetical protein CGI-301
Length = 171
Score = 35.0 bits (79), Expect = 0.16
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = -1
Query: 89 LKAMKQASTALKSSHQNMDVDKVNDILDD 3
LK M A+ A K++H NMD+DKV++++ D
Sbjct: 66 LKNMGSAAKAKKAAHDNMDIDKVDELMQD 94
>sp|Q6FW96|SNF7_CANGA Vacuolar sorting protein SNF7 (Vacuolar protein sorting-associated
protein VPS32)
Length = 228
Score = 35.0 bits (79), Expect = 0.16
Identities = 12/29 (41%), Positives = 23/29 (79%)
Frame = -1
Query: 89 LKAMKQASTALKSSHQNMDVDKVNDILDD 3
++AMKQ + A+KS H +D+D+V++ +D+
Sbjct: 102 MRAMKQGAKAMKSIHSGLDIDRVDETMDE 130
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,377,178
Number of Sequences: 369166
Number of extensions: 1691111
Number of successful extensions: 4273
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4260
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5121172350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)