Planarian EST Database

DrC_00585

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00585 GGCTTGCTTTCTCATTATTAATATTATCAATTGTATCATGCTTTTATGCTGATGCTTTAC TTCTTGGAGGAGGAGCTAAAGTGAAGGTTTCTGGAGGTGGACTTTTAGATGGAGTTTTAG GAGGAGGTGAAGGAAATAATGGTGGACTTTTGGGTGGACTTCTAGGTGGACTTTTAGGTG GAAAAGGTGGAATACTTGGTTTGGATAAATTACTATCTGGATTACCACTAACAAATATAG TTGGAGGTCTTTTGGATACACTCGAGAAAACAATTCCACTCAATATATTTTCTACTGTAA AAAGTCTATTAAATGAAATTCTCGATTTGGTAAAAGATTTGTTGAAATTAGAAAGTGATC CTGCTAAATTACAAAGAATTAGTAAATTGTTGAATGATTTGAATAGTAAAGGATACAGTT TTGAGAAATTGAGAAAGAAATATTTCAAAGATGTCGATCTCGAAGCAGTTGTAAAAGCTA AAGTTGATGTGAATGATGATGACGATTAAATGTGATTCATTAAATATGATTCGTTTATGA TAATTACAATAAAACATTGTTCATTTTTGATAATAACAATAAAATATTGTTCATTTTTTT AAAAATACGTATTGTTTGTTCAATGATTTGTTTCTGACAATAAAACATTCTTAAAT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00585
         (656 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q58295|DPOL_METJA  DNA polymerase [Contains: Mja pol-1 in...    33   0.85 
sp|Q9K974|RECN_BACHD  DNA repair protein recN (Recombination...    32   1.9  
sp|Q97WH0|RAD50_SULSO  DNA double-strand break repair rad50 ...    31   2.5  
sp|O67247|YB87_AQUAE  Hypothetical protein AQ_1187                 31   3.2  
sp|P21249|ANT1_ONCVO  Major antigen (Myosin-like antigen)          30   4.2  
sp|P36420|SYV_LACCA  Valyl-tRNA synthetase (Valine--tRNA lig...    30   5.5  
sp|Q8K999|Y450_BUCAP  Hypothetical transport protein BUsg450       30   5.5

>sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 intein; Mja pol-2 intein]
          Length = 1634

 Score = 32.7 bits (73), Expect = 0.85
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 315  EILDLVKDLLKLESDPAKLQRISKLLNDLNSKGYSFEKLRKK 440
            +I + + DL++   D  K   IS++L   N K +SF+K+ KK
Sbjct: 902  KIGEYIDDLMRKHKDKIKFSGISEILETKNLKTFSFDKITKK 943

>sp|Q9K974|RECN_BACHD DNA repair protein recN (Recombination protein N)
          Length = 565

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +3

Query: 306 LLNEILDLVKDLL-KLESDPAKLQRISKLLNDLNSKGYSFEKLRKKYFKDVD 458
           LL E +  ++D L KLE DP +L+ I   L++L       +KL++KY   VD
Sbjct: 277 LLEEAMFTLRDYLDKLEFDPTRLEMIESRLHEL-------QKLKRKYGDSVD 321

>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase
          Length = 864

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = +3

Query: 252 LDTLEKTIPLNIFSTVKSLLNEILDLVKDLLKLESDPAKLQRISKLLNDLNSKGYSFEKL 431
           LD +E+    N   TV+     +L+L KD  KLE +   ++ + K + D+  +   +EK 
Sbjct: 178 LDRIEQDYN-NFKKTVEEKRARVLELKKDKEKLEDE---IKNLEKRIKDIKDQFDEYEKK 233

Query: 432 RKKYFK 449
           R +Y K
Sbjct: 234 RNQYLK 239

>sp|O67247|YB87_AQUAE Hypothetical protein AQ_1187
          Length = 167

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 14/43 (32%), Positives = 28/43 (65%)
 Frame = +3

Query: 315 EILDLVKDLLKLESDPAKLQRISKLLNDLNSKGYSFEKLRKKY 443
           +++++ ++LLK+E    K Q  SK+++ LN+ GY   ++  KY
Sbjct: 25  KLVNIYRELLKVEETLKKGQINSKVIDKLNALGYPIYQIYSKY 67

>sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen)
          Length = 2022

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +3

Query: 231  TNIVGGLLDTL--EKTIPLNIFSTVKSLLNEILDLVKDLLKLESDPAKLQRISKLLNDLN 404
            TN +  L  T+  ++TI   I   +   LNE   L  DL  L+   A+++   K++ND  
Sbjct: 1676 TNRLNSLEKTVSQQRTIETEIRQQLSLALNERNTLQNDLRDLQRRLARMETEKKIMND-- 1733

Query: 405  SKGYSFEKLRKKYFKDVDL 461
             K    EK+R    K ++L
Sbjct: 1734 -KYDELEKIRASLIKRIEL 1751

>sp|P36420|SYV_LACCA Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
          Length = 901

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +3

Query: 291 STVKSLLNEILDLVKDLLKLESDPAKL-QRISKLLNDLNSKGY 416
           +T+   LNE++DL ++  KL  D  KL Q I+++   LN++G+
Sbjct: 823 ATIFVPLNELIDLDEEKAKLTKDAKKLEQEIARIDKKLNNQGF 865

>sp|Q8K999|Y450_BUCAP Hypothetical transport protein BUsg450
          Length = 391

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 542 YHKRIIFNESHLIVIIIHINFSFY--NCFEIDIFEIFLSQFLKTVS 411
           Y   I+F+   L +I+ +  F F+  N  EI IF IFLS  L  +S
Sbjct: 253 YFATIVFSFFFLFLIVFYFKFHFFLKNIIEICIFFIFLSLLLFLLS 298

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,143,060
Number of Sequences: 369166
Number of extensions: 757548
Number of successful extensions: 2491
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2487
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5462583840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00585

Planaria EST Database

DrC_00585

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail