Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_F22
(445 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 in... 33 0.37
sp|Q9K974|RECN_BACHD DNA repair protein recN (Recombination... 32 0.82
sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ... 31 1.1
sp|O67247|YB87_AQUAE Hypothetical protein AQ_1187 31 1.4
sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen) 30 1.8
sp|P36420|SYV_LACCA Valyl-tRNA synthetase (Valine--tRNA lig... 30 2.4
sp|P23098|DYHC_TRIGR Dynein beta chain, ciliary 30 3.1
sp|Q62000|MIME_MOUSE Mimecan precursor (Osteoglycin) 29 4.0
sp|P46509|Y1316_MYCLE Putative AAA-family ATPase ML1316 29 4.0
sp|P39057|DYHC_ANTCR Dynein beta chain, ciliary 29 4.0
>sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 intein; Mja pol-2 intein]
Length = 1634
Score = 32.7 bits (73), Expect = 0.37
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 288 EILDLVKDLLKLESDPAKLQRISKLLNDLNSKGYSFEKLRKK 413
+I + + DL++ D K IS++L N K +SF+K+ KK
Sbjct: 902 KIGEYIDDLMRKHKDKIKFSGISEILETKNLKTFSFDKITKK 943
>sp|Q9K974|RECN_BACHD DNA repair protein recN (Recombination protein N)
Length = 565
Score = 31.6 bits (70), Expect = 0.82
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 279 LLNEILDLVKDLL-KLESDPAKLQRISKLLNDLNSKGYSFEKLRKKYFKDVD 431
LL E + ++D L KLE DP +L+ I L++L +KL++KY VD
Sbjct: 277 LLEEAMFTLRDYLDKLEFDPTRLEMIESRLHEL-------QKLKRKYGDSVD 321
>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase
Length = 864
Score = 31.2 bits (69), Expect = 1.1
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = +3
Query: 225 LDTLEKTIPLNIFSTVKSLLNEILDLVKDLLKLESDPAKLQRISKLLNDLNSKGYSFEKL 404
LD +E+ N TV+ +L+L KD KLE + ++ + K + D+ + +EK
Sbjct: 178 LDRIEQDYN-NFKKTVEEKRARVLELKKDKEKLEDE---IKNLEKRIKDIKDQFDEYEKK 233
Query: 405 RKKYFK 422
R +Y K
Sbjct: 234 RNQYLK 239
>sp|O67247|YB87_AQUAE Hypothetical protein AQ_1187
Length = 167
Score = 30.8 bits (68), Expect = 1.4
Identities = 14/43 (32%), Positives = 28/43 (65%)
Frame = +3
Query: 288 EILDLVKDLLKLESDPAKLQRISKLLNDLNSKGYSFEKLRKKY 416
+++++ ++LLK+E K Q SK+++ LN+ GY ++ KY
Sbjct: 25 KLVNIYRELLKVEETLKKGQINSKVIDKLNALGYPIYQIYSKY 67
>sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen)
Length = 2022
Score = 30.4 bits (67), Expect = 1.8
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +3
Query: 204 TNIVGGLLDTL--EKTIPLNIFSTVKSLLNEILDLVKDLLKLESDPAKLQRISKLLNDLN 377
TN + L T+ ++TI I + LNE L DL L+ A+++ K++ND
Sbjct: 1676 TNRLNSLEKTVSQQRTIETEIRQQLSLALNERNTLQNDLRDLQRRLARMETEKKIMND-- 1733
Query: 378 SKGYSFEKLRKKYFKDVDL 434
K EK+R K ++L
Sbjct: 1734 -KYDELEKIRASLIKRIEL 1751
>sp|P36420|SYV_LACCA Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
Length = 901
Score = 30.0 bits (66), Expect = 2.4
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +3
Query: 264 STVKSLLNEILDLVKDLLKLESDPAKL-QRISKLLNDLNSKGY 389
+T+ LNE++DL ++ KL D KL Q I+++ LN++G+
Sbjct: 823 ATIFVPLNELIDLDEEKAKLTKDAKKLEQEIARIDKKLNNQGF 865
>sp|P23098|DYHC_TRIGR Dynein beta chain, ciliary
Length = 4466
Score = 29.6 bits (65), Expect = 3.1
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 11/56 (19%)
Frame = +3
Query: 309 DLLKLESDPAKL-----QRI--SKLLNDLNSKGYSFEKL----RKKYFKDVDLEAV 443
DLLK D A+L QR+ K++ND + + +FEKL KK+F+DVD EA+
Sbjct: 2676 DLLKAPIDFARLWMHECQRVYGDKMINDQDIE--AFEKLVLEYAKKFFEDVDEEAL 2729
>sp|Q62000|MIME_MOUSE Mimecan precursor (Osteoglycin)
Length = 298
Score = 29.3 bits (64), Expect = 4.0
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Frame = +3
Query: 207 NIVGGLLDTLEKTIPLNIFSTVKSLLNEILDLVKDLLKLESDPAKLQRISKLLNDLNSKG 386
+ G L++ +E FS + SLL E+ LL+L P KL ++ N + SKG
Sbjct: 149 DFTGNLIEDIED----GTFSKL-SLLEELTLAENQLLRLPVLPPKLTLLNAKHNKIKSKG 203
Query: 387 Y---SFEKLRK---KYFKDVDLEAV 443
+F+KL K Y DLE+V
Sbjct: 204 IKANTFKKLNKLSFLYLDHNDLESV 228
>sp|P46509|Y1316_MYCLE Putative AAA-family ATPase ML1316
Length = 609
Score = 29.3 bits (64), Expect = 4.0
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +3
Query: 291 ILDLVKDLLKLESDPAKLQRISKLLNDLNSKGYSFEKLRKKYFKDVDLEAV 443
+LD V L +S P KL+ LL D + GY+FE++ K +D+ LE V
Sbjct: 197 LLDGVPGALNDDSRPRKLRPGDSLLVDPKA-GYAFERVPKAEVEDLVLEEV 246
>sp|P39057|DYHC_ANTCR Dynein beta chain, ciliary
Length = 4466
Score = 29.3 bits (64), Expect = 4.0
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 11/56 (19%)
Frame = +3
Query: 309 DLLKLESDPAKL-----QRI--SKLLNDLNSKGYSFEKL----RKKYFKDVDLEAV 443
DLLK D A+L QR+ K++ND + + +FEKL KK+F+DVD EA+
Sbjct: 2676 DLLKSPIDFARLWMHECQRVYGDKMINDQDIE--AFEKLVFEYAKKFFEDVDEEAL 2729
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,769,069
Number of Sequences: 369166
Number of extensions: 494568
Number of successful extensions: 1883
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1879
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2344429560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)