Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_G07
(320 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 in... 33 0.26
sp|Q9K974|RECN_BACHD DNA repair protein recN (Recombination... 32 0.59
sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ... 31 1.0
sp|O67247|YB87_AQUAE Hypothetical protein AQ_1187 31 1.0
sp|P36420|SYV_LACCA Valyl-tRNA synthetase (Valine--tRNA lig... 30 1.7
sp|Q9CNC4|LST_PASMU CMP-N-acetylneuraminate-beta-galactosam... 29 3.8
sp|P17765|POLG_BYMV Genome polyprotein [Contains: P1 protei... 29 3.8
sp|P34521|YM45_CAEEL Hypothetical protein K11H3.5 precursor 28 5.0
sp|Q8K999|Y450_BUCAP Hypothetical transport protein BUsg450 28 5.0
sp|P46509|Y1316_MYCLE Putative AAA-family ATPase ML1316 28 6.5
>sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 intein; Mja pol-2 intein]
Length = 1634
Score = 32.7 bits (73), Expect = 0.26
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 39 EILDLVKDLLKLESDPAKLQRISKLLNDLNSKGYSFEKLRKK 164
+I + + DL++ D K IS++L N K +SF+K+ KK
Sbjct: 902 KIGEYIDDLMRKHKDKIKFSGISEILETKNLKTFSFDKITKK 943
>sp|Q9K974|RECN_BACHD DNA repair protein recN (Recombination protein N)
Length = 565
Score = 31.6 bits (70), Expect = 0.59
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 30 LLNEILDLVKDLL-KLESDPAKLQRISKLLNDLNSKGYSFEKLRKKYFKDVD 182
LL E + ++D L KLE DP +L+ I L++L +KL++KY VD
Sbjct: 277 LLEEAMFTLRDYLDKLEFDPTRLEMIESRLHEL-------QKLKRKYGDSVD 321
>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase
Length = 864
Score = 30.8 bits (68), Expect = 1.0
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 6 NIFSTVKSLLNEILDLVKDLLKLESDPAKLQRISKLLNDLNSKGYSFEKLRKKYFK 173
N TV+ +L+L KD KLE + ++ + K + D+ + +EK R +Y K
Sbjct: 187 NFKKTVEEKRARVLELKKDKEKLEDE---IKNLEKRIKDIKDQFDEYEKKRNQYLK 239
>sp|O67247|YB87_AQUAE Hypothetical protein AQ_1187
Length = 167
Score = 30.8 bits (68), Expect = 1.0
Identities = 14/43 (32%), Positives = 28/43 (65%)
Frame = +3
Query: 39 EILDLVKDLLKLESDPAKLQRISKLLNDLNSKGYSFEKLRKKY 167
+++++ ++LLK+E K Q SK+++ LN+ GY ++ KY
Sbjct: 25 KLVNIYRELLKVEETLKKGQINSKVIDKLNALGYPIYQIYSKY 67
>sp|P36420|SYV_LACCA Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
Length = 901
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +3
Query: 15 STVKSLLNEILDLVKDLLKLESDPAKL-QRISKLLNDLNSKGY 140
+T+ LNE++DL ++ KL D KL Q I+++ LN++G+
Sbjct: 823 ATIFVPLNELIDLDEEKAKLTKDAKKLEQEIARIDKKLNNQGF 865
>sp|Q9CNC4|LST_PASMU CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase (Beta-galactoside
alpha-2,3-sialyltransferase) (Alpha 2,3-ST)
(Lipooligosaccharide sialyltransferase)
Length = 308
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 12 FSTVKSLLNEILDLVKDLLKLESDPAKLQRISKLLNDLNSKGYSFEKLR 158
F+ + + + +++V + L + DPA LQR KL+N L YS + LR
Sbjct: 104 FNLLNTFDDGTINIVPNSLFYQDDPATLQR--KLINVLLGNKYSIQSLR 150
>sp|P17765|POLG_BYMV Genome polyprotein [Contains: P1 proteinase (N-terminal protein);
Helper component proteinase (HC-pro); Protein P3; 6 kDa
protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6
kDa protein 2 (6K2); Viral genome-linked protein (VPg);
Nuclear inclusion protein A (NI-a) (NIa) (NIa-pro) (49
kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B
(NI-b) (NIb) (RNA-directed RNA polymerase); Coat protein
(CP)]
Length = 3056
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/46 (28%), Positives = 31/46 (67%)
Frame = +3
Query: 42 ILDLVKDLLKLESDPAKLQRISKLLNDLNSKGYSFEKLRKKYFKDV 179
+++ K L++DP+ +QR K+L++L ++ E+ +++YF++V
Sbjct: 1666 VVNACKIAYTLQTDPSSIQRTIKILDELIAR----EQQKREYFQNV 1707
>sp|P34521|YM45_CAEEL Hypothetical protein K11H3.5 precursor
Length = 107
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 57 KDLLKLESDPAKLQRISKLL-NDLNSKGYSFEKLRKKY 167
K L LE + A L+++ + L ND+ K EKLR+ Y
Sbjct: 42 KSLQMLEEEQALLEKVVETLSNDIEEKEEKIEKLRRSY 79
>sp|Q8K999|Y450_BUCAP Hypothetical transport protein BUsg450
Length = 391
Score = 28.5 bits (62), Expect = 5.0
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -1
Query: 254 IIFNESHLIVIIIHINFSFY--NCFEIDIFEIFLSQFLKTVS 135
I+F+ L +I+ + F F+ N EI IF IFLS L +S
Sbjct: 257 IVFSFFFLFLIVFYFKFHFFLKNIIEICIFFIFLSLLLFLLS 298
>sp|P46509|Y1316_MYCLE Putative AAA-family ATPase ML1316
Length = 609
Score = 28.1 bits (61), Expect = 6.5
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +3
Query: 42 ILDLVKDLLKLESDPAKLQRISKLLNDLNSKGYSFEKLRKKYFKDVDLE 188
+LD V L +S P KL+ LL D + GY+FE++ K +D+ LE
Sbjct: 197 LLDGVPGALNDDSRPRKLRPGDSLLVDPKA-GYAFERVPKAEVEDLVLE 244
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,147,689
Number of Sequences: 369166
Number of extensions: 371996
Number of successful extensions: 1294
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 68,354,980
effective HSP length: 75
effective length of database: 54,499,855
effective search space used: 1689495505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)