Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_I06
(551 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6DT84|MATK_SOLAP Maturase K (Intron maturase) 31 1.8
sp|P01019|ANGT_HUMAN Angiotensinogen precursor [Contains: A... 29 6.7
sp|Q9GLP6|ANGT_GORGO Angiotensinogen precursor [Contains: A... 29 6.7
>sp|Q6DT84|MATK_SOLAP Maturase K (Intron maturase)
Length = 512
Score = 31.2 bits (69), Expect = 1.8
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +1
Query: 232 LLYTLEKTIPLNIFSTVKSLLNEILYLVKDLLKLESDPAILHRIS--KLLNDMNRKGYSF 405
L+Y L+ IP +I + L+ + Y VKD L A LH+ K L + +SF
Sbjct: 150 LIYVLDLLIPQSIHLEI--LIQTLRYWVKDASSLHLLRAFLHKYHNWKNLITPKKSSFSF 207
Query: 406 EK*RKKYF 429
K K++F
Sbjct: 208 SKRNKRFF 215
>sp|P01019|ANGT_HUMAN Angiotensinogen precursor [Contains: Angiotensin I (Ang I);
Angiotensin II (Ang II); Angiotensin III (Ang III)
(Des-Asp[1]-angiotensin II)]
Length = 485
Score = 29.3 bits (64), Expect = 6.7
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 244 LEKTIPLNIFSTVKSLLNEILYLVKDLLKLESDPAILH---RISKLLNDMNRKG 396
++K P I T+ L+ + Y ++DLL PAILH + KL ND R G
Sbjct: 369 MKKLSPRTIHLTMPQLVLQGSYDLQDLLAQAELPAILHTELNLQKLSNDRIRVG 422
>sp|Q9GLP6|ANGT_GORGO Angiotensinogen precursor [Contains: Angiotensin I (Ang I);
Angiotensin II (Ang II); Angiotensin III (Ang III)
(Des-Asp[1]-angiotensin II)]
Length = 485
Score = 29.3 bits (64), Expect = 6.7
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 244 LEKTIPLNIFSTVKSLLNEILYLVKDLLKLESDPAILH---RISKLLNDMNRKG 396
++K P I T+ L+ + Y ++DLL PAILH + KL ND R G
Sbjct: 369 MKKLSPRTIHLTMPQLVLQGSYDLQDLLAQAELPAILHTELNLQKLSNDRIRVG 422
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,608,437
Number of Sequences: 369166
Number of extensions: 754889
Number of successful extensions: 1894
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1892
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3882260660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)