Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_H03
(186 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O51035|Y001_BORBU Hypothetical protein BB0001 28 4.9
sp|Q89B25|Y030_BUCBP Hypothetical protein bbp030 28 6.4
>sp|O51035|Y001_BORBU Hypothetical protein BB0001
Length = 190
Score = 28.5 bits (62), Expect = 4.9
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
Frame = -3
Query: 175 MFYCNYHKRIIFNESYLIVI-----------IHINFSFYNCFEIDIFEIFLSQFLKTVSF 29
+ Y NY I +NE+Y + I I FS N F I + F+S ++F
Sbjct: 45 IIYHNYINSIFYNENYKYIAFIGILTSYNEWIEIQFSPINFFTIPTNKDFISNTYFNLAF 104
Query: 28 TIQI 17
TI I
Sbjct: 105 TIYI 108
>sp|Q89B25|Y030_BUCBP Hypothetical protein bbp030
Length = 267
Score = 28.1 bits (61), Expect = 6.4
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = -3
Query: 172 FYCNYHKRIIFNESYLIV----IIHINFSFYNCFEI 77
F C K+++ E Y+I ++++FSF NC EI
Sbjct: 149 FTCKNVKKLLCLEKYIISHWGKYVNVSFSFLNCLEI 184
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,123,858
Number of Sequences: 369166
Number of extensions: 150756
Number of successful extensions: 452
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 68,354,980
effective HSP length: 34
effective length of database: 62,073,990
effective search space used: 1675997730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)