Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_B15
(513 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 in... 34 0.18
sp|Q9K974|RECN_BACHD DNA repair protein recN (Recombination... 32 1.2
sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ... 31 1.5
sp|O67247|YB87_AQUAE Hypothetical protein AQ_1187 30 2.6
sp|Q8K999|Y450_BUCAP Hypothetical transport protein BUsg450 30 3.3
sp|P34845|CYB_APILI Cytochrome b 30 4.4
sp|P36420|SYV_LACCA Valyl-tRNA synthetase (Valine--tRNA lig... 30 4.4
sp|Q8J1G1|KIP2_ASHGO Kinesin-like protein KIP2 30 4.4
sp|Q9HJH0|Y998_THEAC Hypothetical UPF0334 kinase-like prote... 29 5.7
sp|Q9UTI6|ECT1_SCHPO Probable ethanolamine-phosphate cytidy... 29 7.5
>sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 intein; Mja pol-2 intein]
Length = 1634
Score = 34.3 bits (77), Expect = 0.18
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 262 EILDLVKDLLKLESDPVKLQRISKLLNDLNSKGYSFEKLRKK 387
+I + + DL++ D +K IS++L N K +SF+K+ KK
Sbjct: 902 KIGEYIDDLMRKHKDKIKFSGISEILETKNLKTFSFDKITKK 943
>sp|Q9K974|RECN_BACHD DNA repair protein recN (Recombination protein N)
Length = 565
Score = 31.6 bits (70), Expect = 1.2
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 253 LLNEILDLVKDLL-KLESDPVKLQRISKLLNDLNSKGYSFEKLRKKYFKDVD 405
LL E + ++D L KLE DP +L+ I L++L +KL++KY VD
Sbjct: 277 LLEEAMFTLRDYLDKLEFDPTRLEMIESRLHEL-------QKLKRKYGDSVD 321
>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase
Length = 864
Score = 31.2 bits (69), Expect = 1.5
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = +1
Query: 199 LDTLEKTIPLNIFSTVKSLLNEILDLVKDLLKLESDPVKLQRISKLLNDLNSKGYSFEKL 378
LD +E+ N TV+ +L+L KD KLE + ++ + K + D+ + +EK
Sbjct: 178 LDRIEQDYN-NFKKTVEEKRARVLELKKDKEKLEDE---IKNLEKRIKDIKDQFDEYEKK 233
Query: 379 RKKYFK 396
R +Y K
Sbjct: 234 RNQYLK 239
>sp|O67247|YB87_AQUAE Hypothetical protein AQ_1187
Length = 167
Score = 30.4 bits (67), Expect = 2.6
Identities = 14/43 (32%), Positives = 28/43 (65%)
Frame = +1
Query: 262 EILDLVKDLLKLESDPVKLQRISKLLNDLNSKGYSFEKLRKKY 390
+++++ ++LLK+E K Q SK+++ LN+ GY ++ KY
Sbjct: 25 KLVNIYRELLKVEETLKKGQINSKVIDKLNALGYPIYQIYSKY 67
>sp|Q8K999|Y450_BUCAP Hypothetical transport protein BUsg450
Length = 391
Score = 30.0 bits (66), Expect = 3.3
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -1
Query: 489 YHKRIIFNESHLIVIIIHINFSFY--NCFEIDIFEIFLSQFLKTVS 358
Y I+F+ L +I+ + F F+ N EI IF IFLS L +S
Sbjct: 253 YFATIVFSFFFLFLIVFYFKFHFFLKNIIEICIFFIFLSLLLFLLS 298
>sp|P34845|CYB_APILI Cytochrome b
Length = 383
Score = 29.6 bits (65), Expect = 4.4
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = -2
Query: 392 KYFFLNFSKLYPLLFKSFNNLLILCNLTGSLSNFNKSFTKSRISFNRLFTVENIL 228
++F L+F +LF +L L +LTGS + +F +ISF+ F+++++L
Sbjct: 179 RFFSLHFILPLLILFMVILHLFAL-HLTGSSNPLGSNFNNYKISFHPYFSIKDLL 232
>sp|P36420|SYV_LACCA Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
Length = 901
Score = 29.6 bits (65), Expect = 4.4
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +1
Query: 238 STVKSLLNEILDLVKDLLKLESDPVKL-QRISKLLNDLNSKGY 363
+T+ LNE++DL ++ KL D KL Q I+++ LN++G+
Sbjct: 823 ATIFVPLNELIDLDEEKAKLTKDAKKLEQEIARIDKKLNNQGF 865
>sp|Q8J1G1|KIP2_ASHGO Kinesin-like protein KIP2
Length = 685
Score = 29.6 bits (65), Expect = 4.4
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +1
Query: 220 IPLNIFSTVKSLLNEILDLVKD----LLKLESDPVKLQRISKLLNDLNSKGYSFEKLRKK 387
+PL+I S ++S + + ++ + KLESD +K QR + + S +++K
Sbjct: 557 LPLDIASVLESKVQGMESQLRQYRVYVQKLESDLLKAQRNIITTHSVQFNRQSTANVQEK 616
Query: 388 YFKDVDLE 411
Y DVD+E
Sbjct: 617 YGSDVDIE 624
>sp|Q9HJH0|Y998_THEAC Hypothetical UPF0334 kinase-like protein Ta0998
Length = 181
Score = 29.3 bits (64), Expect = 5.7
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +1
Query: 220 IPLNIFSTVKSLLNEILDLVKDLLKLESDPVKLQRISKLLNDLNSKGYSFEKLRKK 387
I + I V S+ +E L + D+LK ++ V+ +SK+ N+ GY+ E + K
Sbjct: 6 IKIGITGPVGSIKSEALQKIIDMLKNDNLNVQGVLVSKVTNNGKLTGYTIEDIESK 61
>sp|Q9UTI6|ECT1_SCHPO Probable ethanolamine-phosphate cytidylyltransferase
(Phosphorylethanolamine transferase)
(CTP:phosphoethanolamine cytidylyltransferase)
Length = 365
Score = 28.9 bits (63), Expect = 7.5
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +1
Query: 196 LLDTLEKTIPLNIFSTVKSLLNEILDLVK 282
LLD L ++PL I+ST S+L+ +DL++
Sbjct: 135 LLDRLLSSVPLEIYSTPVSVLSSQIDLLR 163
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,680,640
Number of Sequences: 369166
Number of extensions: 569267
Number of successful extensions: 2038
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2034
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3304927425
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)