Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_B13
(456 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8TT60|HEM1_METAC Glutamyl-tRNA reductase (GluTR) 34 0.13
sp|P25386|USO1_YEAST Intracellular protein transport protei... 32 0.66
sp|Q9UTI6|ECT1_SCHPO Probable ethanolamine-phosphate cytidy... 30 2.5
sp|Q10233|RPC2_SCHPO Putative DNA-directed RNA polymerase I... 30 3.3
sp|Q9K974|RECN_BACHD DNA repair protein recN (Recombination... 30 3.3
sp|Q24702|DVA1_DICVI DVA-1 polyprotein precursor (Antigen 1... 30 3.3
sp|Q6N069|NARGL_HUMAN NMDA receptor regulated 1-like protei... 29 4.3
sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and ... 29 4.3
sp|Q89YY3|CLPB_BACTN Chaperone clpB 29 4.3
sp|P54074|YM08_YEAST Hypothetical 71.4 kDa protein in ILV2-... 29 5.6
>sp|Q8TT60|HEM1_METAC Glutamyl-tRNA reductase (GluTR)
Length = 460
Score = 34.3 bits (77), Expect = 0.13
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +1
Query: 175 EILDLVRDLLKLESDPAKLQKIGKLLSEVNSEGHSFEKLIKRYFKDVDLEAVVKAKAEVN 354
E LD+V + LE D AKL+KI + E G + E+ + V +AVVK +A V
Sbjct: 400 EFLDVVSRVFCLEKDKAKLEKINQAKFEQIEPGCAKEQAAVKEQTAVKEQAVVKEQAAVK 459
Query: 355 D 357
D
Sbjct: 460 D 460
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 (Int-1)
Length = 1790
Score = 32.0 bits (71), Expect = 0.66
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Frame = +1
Query: 109 LLDTLEKTIPLNIFSTVKSLLNEILDLVRDLLKLESDPAKLQKIGKLLSEVNSEGH---- 276
LL+ + T PL S + SL I +V LL +P + + I L++ VN H
Sbjct: 164 LLEAVMATRPLKARSALISLPTSISTMV-SLLDDMHEPIRDEAILLLMAVVNDSPHVQKL 222
Query: 277 -SFEKLIKRYFKDVDLEAVVKAKAEVND 357
+FE + +R F ++ E ++ VND
Sbjct: 223 VAFENIFERLFSIIEEEGGLRGSLVVND 250
>sp|Q9UTI6|ECT1_SCHPO Probable ethanolamine-phosphate cytidylyltransferase
(Phosphorylethanolamine transferase)
(CTP:phosphoethanolamine cytidylyltransferase)
Length = 365
Score = 30.0 bits (66), Expect = 2.5
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 109 LLDTLEKTIPLNIFSTVKSLLNEILDLVR 195
LLD L ++PL I+ST S+L+ +DL+R
Sbjct: 135 LLDRLLSSVPLEIYSTPVSVLSSQIDLLR 163
>sp|Q10233|RPC2_SCHPO Putative DNA-directed RNA polymerase III 130 kDa polypeptide (RNA
polymerase III subunit 2)
Length = 1165
Score = 29.6 bits (65), Expect = 3.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 301 YFKDVDLEAVVKAKAEVNDDDE*M*FIKYDSLNV 402
YF DVDL+ +V+A +V D E ++KY + V
Sbjct: 73 YFVDVDLKKIVQANEKVTSDVEPWFYLKYLDIRV 106
>sp|Q9K974|RECN_BACHD DNA repair protein recN (Recombination protein N)
Length = 565
Score = 29.6 bits (65), Expect = 3.3
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 166 LLNEILDLVRDLL-KLESDPAKLQKIGKLLSEVNSEGHSFEKLIKRYFKDVDLEAVVKAK 342
LL E + +RD L KLE DP +L+ I S H +KL ++Y VD A+V+
Sbjct: 277 LLEEAMFTLRDYLDKLEFDPTRLEMI-------ESRLHELQKLKRKYGDSVD--AIVEYA 327
Query: 343 AEVND 357
+ + +
Sbjct: 328 STIEE 332
>sp|Q24702|DVA1_DICVI DVA-1 polyprotein precursor (Antigen 1) (Allergen 1) (Nematode
polyprotein allergen DVA-1) (NPA DVA-1) [Contains: DVA-1
unit A; DVA-1 unit B; DVA-1 unit C; DVA-1 unit D; DVA-1
unit E; DVA-1 unit F; DVA-1 unit G; DVA-1 unit H; DVA-1
unit I; DVA-1 unit J; DVA-1 unit K; DVA-1 unit L;
C-terminal extension peptide]
Length = 1557
Score = 29.6 bits (65), Expect = 3.3
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Frame = +1
Query: 145 IFSTVKSLLNEILDLVRDLLKLESDPA-----KLQKIGKLLSEVNSEGHSFEKLIKRY-- 303
I V+ ++N+I D + ++ +D A ++ I K L NSE HS E+ ++RY
Sbjct: 767 IAKKVEDVINQISD---ESIRSRADEALLVCKRIFGIVKRLRRDNSEIHSLEEAMERYLT 823
Query: 304 FKDVDLEAVVKAKAEVND 357
+ D + V+K+ +VND
Sbjct: 824 WLSDDQKIVIKSIYDVND 841
>sp|Q6N069|NARGL_HUMAN NMDA receptor regulated 1-like protein (NARG1-like protein)
Length = 864
Score = 29.3 bits (64), Expect = 4.3
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = -2
Query: 305 KYLFISFSKLCPSLFTSLNNL 243
K+L ++FSK CP LFT+L +L
Sbjct: 312 KFLRVNFSKGCPPLFTTLKSL 332
>sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and WD-40 domain protein 8) (F-box
only protein 29)
Length = 598
Score = 29.3 bits (64), Expect = 4.3
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 203 NKSLTKSRISFNRLFTVENILSGIVFSRVSKSPPPIFVSGNPDSNL 66
+K L S + RL + N+L +S SPP + VSGN D +
Sbjct: 412 SKILVYSLEAGRRLLKLGNVLRDFTCVNLSDSPPNLMVSGNMDGRV 457
>sp|Q89YY3|CLPB_BACTN Chaperone clpB
Length = 862
Score = 29.3 bits (64), Expect = 4.3
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 181 LDLVRDLLKLESDPAKLQKIGKLLSEVNSEGHSFE 285
L++ R+ +K E+D KL+ IGK L+E+ SF+
Sbjct: 420 LEIEREAIKRENDKPKLEIIGKELAELKEVEKSFK 454
>sp|P54074|YM08_YEAST Hypothetical 71.4 kDa protein in ILV2-ADE17 intergenic region
Length = 624
Score = 28.9 bits (63), Expect = 5.6
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +1
Query: 136 PLNIFSTVKSLLNEILDLVRDLLKLE---SDPAKLQKIGKLLSEVNSEGHSFEKLIKRYF 306
P +I +K L+ ++ RD + +DP+K+ KI K S NS GH
Sbjct: 407 PKSIIWIMKKLVGQVFFGFRDNKDEDIPDNDPSKMLKITKTNSLNNSAGHK--------- 457
Query: 307 KDVDLEAVVKAKAEVNDDDE 366
+D++LE + + E ++D E
Sbjct: 458 EDIELELLNTSDDEYSEDYE 477
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,366,734
Number of Sequences: 369166
Number of extensions: 754189
Number of successful extensions: 2458
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2457
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2484837250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)