Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_K19
(417 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21182|DCAM_YEAST S-adenosylmethionine decarboxylase pro... 28 7.5
sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-form... 28 7.5
>sp|P21182|DCAM_YEAST S-adenosylmethionine decarboxylase proenzyme (AdoMetDC) (SamDC)
[Contains: S-adenosylmethionine decarboxylase alpha
chain; S-adenosylmethionine decarboxylase beta chain]
Length = 396
Score = 28.1 bits (61), Expect = 7.5
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = -3
Query: 283 DHFLISTNLFPNREFHLIDFLQ*KIY*VESFSRVYSKDLQLYMLVVIQIVIYPNQVFHLI 104
D L N+F REF + F K Y +SF ++ S + L + + ++Y +HL
Sbjct: 331 DVLLHILNVFQpreFSMTFFT--KNYQNQSFQKLLSINESLPDYIKLDKIVYDLDDYHLF 388
Query: 103 HLKVHLEV 80
++K+ ++
Sbjct: 389 YMKLQKKI 396
>sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, beta
chain) (SCS-beta)
Length = 447
Score = 28.1 bits (61), Expect = 7.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 292 LQRIRKLLNDLNSKGYSFEKLRKKYFKDVDLEAVVKAKVDVN 417
++ R+L+ND K +S + L+ K V L VVK D++
Sbjct: 397 MEAARQLINDSGMKIFSIDDLQSAAEKSVQLSKVVKMARDID 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,405,506
Number of Sequences: 369166
Number of extensions: 425479
Number of successful extensions: 1236
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1952582385
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)