Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_P24
(548 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47729|DPO3_MYCPU DNA polymerase III polC-type (PolIII) 32 0.78
sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen) 32 1.3
sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 in... 31 1.7
sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ... 31 2.3
sp|O67247|YB87_AQUAE Hypothetical protein AQ_1187 31 2.3
sp|Q8K999|Y450_BUCAP Hypothetical transport protein BUsg450 30 3.0
sp|P34521|YM45_CAEEL Hypothetical protein K11H3.5 precursor 30 5.1
sp|Q9UTI6|ECT1_SCHPO Probable ethanolamine-phosphate cytidy... 29 6.6
sp|O14529|CUTL2_HUMAN Homeobox protein Cux-2 (Cut-like 2) 29 6.6
sp|Q62000|MIME_MOUSE Mimecan precursor (Osteoglycin) 29 8.6
>sp|P47729|DPO3_MYCPU DNA polymerase III polC-type (PolIII)
Length = 1435
Score = 32.3 bits (72), Expect = 0.78
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = -2
Query: 436 SFYNCFEIDI-----FEIFLSQFLKTVSFTIQIIQQFTNSL*FSRLTF*FQQIFYQIENF 272
SF++C EID FE F S +LKT +F Q++++ Q++ ++IEN
Sbjct: 35 SFFSC-EIDFLETPKFEDFKSFYLKTKNFLNQLVKE--------------QKLLFKIENI 79
Query: 271 I**TFYSRKYLEW 233
+KYL+W
Sbjct: 80 FYEKSEIKKYLDW 92
>sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen)
Length = 2022
Score = 31.6 bits (70), Expect = 1.3
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +2
Query: 188 TNIVGGLLDTL--EKTIPLKIFSTVKSLLNEILDLVKDLLKLESEPAKLQRISKLLNDLN 361
TN + L T+ ++TI +I + LNE L DL L+ A+++ K++ND
Sbjct: 1676 TNRLNSLEKTVSQQRTIETEIRQQLSLALNERNTLQNDLRDLQRRLARMETEKKIMND-- 1733
Query: 362 SKGYSFEKLRKKYFKDVDL 418
K EK+R K ++L
Sbjct: 1734 -KYDELEKIRASLIKRIEL 1751
>sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 intein; Mja pol-2 intein]
Length = 1634
Score = 31.2 bits (69), Expect = 1.7
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 272 EILDLVKDLLKLESEPAKLQRISKLLNDLNSKGYSFEKLRKK 397
+I + + DL++ + K IS++L N K +SF+K+ KK
Sbjct: 902 KIGEYIDDLMRKHKDKIKFSGISEILETKNLKTFSFDKITKK 943
>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase
Length = 864
Score = 30.8 bits (68), Expect = 2.3
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +2
Query: 251 TVKSLLNEILDLVKDLLKLESEPAKLQRISKLLNDLNSKGYSFEKLRKKYFK 406
TV+ +L+L KD KLE E ++ + K + D+ + +EK R +Y K
Sbjct: 191 TVEEKRARVLELKKDKEKLEDE---IKNLEKRIKDIKDQFDEYEKKRNQYLK 239
>sp|O67247|YB87_AQUAE Hypothetical protein AQ_1187
Length = 167
Score = 30.8 bits (68), Expect = 2.3
Identities = 14/43 (32%), Positives = 28/43 (65%)
Frame = +2
Query: 272 EILDLVKDLLKLESEPAKLQRISKLLNDLNSKGYSFEKLRKKY 400
+++++ ++LLK+E K Q SK+++ LN+ GY ++ KY
Sbjct: 25 KLVNIYRELLKVEETLKKGQINSKVIDKLNALGYPIYQIYSKY 67
>sp|Q8K999|Y450_BUCAP Hypothetical transport protein BUsg450
Length = 391
Score = 30.4 bits (67), Expect = 3.0
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = -2
Query: 499 YHKRIIFNESHLIVIIIHINFSFY--NCFEIDIFEIFLSQFLKTVSFTIQIIQQFTNSL* 326
Y I+F+ L +I+ + F F+ N EI IF IFLS L +S I F +
Sbjct: 253 YFATIVFSFFFLFLIVFYFKFHFFLKNIIEICIFFIFLSLLLFLLSQHNLICLTFALQIF 312
Query: 325 FSRLTF*FQQIFY 287
F + F +IF+
Sbjct: 313 F--IAFNILEIFF 323
>sp|P34521|YM45_CAEEL Hypothetical protein K11H3.5 precursor
Length = 107
Score = 29.6 bits (65), Expect = 5.1
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 290 KDLLKLESEPAKLQRISKLL-NDLNSKGYSFEKLRKKY 400
K L LE E A L+++ + L ND+ K EKLR+ Y
Sbjct: 42 KSLQMLEEEQALLEKVVETLSNDIEEKEEKIEKLRRSY 79
>sp|Q9UTI6|ECT1_SCHPO Probable ethanolamine-phosphate cytidylyltransferase
(Phosphorylethanolamine transferase)
(CTP:phosphoethanolamine cytidylyltransferase)
Length = 365
Score = 29.3 bits (64), Expect = 6.6
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +2
Query: 206 LLDTLEKTIPLKIFSTVKSLLNEILDLVK 292
LLD L ++PL+I+ST S+L+ +DL++
Sbjct: 135 LLDRLLSSVPLEIYSTPVSVLSSQIDLLR 163
>sp|O14529|CUTL2_HUMAN Homeobox protein Cux-2 (Cut-like 2)
Length = 1424
Score = 29.3 bits (64), Expect = 6.6
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +2
Query: 272 EILDLVKDLLKLES-----EPAKLQRISKLLNDLNSKGYSFEKLRKKYFKDVDLE 421
EIL L+KD+ L+S E A +I+ L L +K + EKL +K D E
Sbjct: 247 EILRLLKDVQHLQSSLQELEEASANQIADLERQLTAKSEAIEKLEEKLQAQSDYE 301
>sp|Q62000|MIME_MOUSE Mimecan precursor (Osteoglycin)
Length = 298
Score = 28.9 bits (63), Expect = 8.6
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = +2
Query: 191 NIVGGLLDTLEKTIPLKIFSTVKSLLNEILDLVKDLLKLESEPAKLQRISKLLNDLNSKG 370
+ G L++ +E K+ SLL E+ LL+L P KL ++ N + SKG
Sbjct: 149 DFTGNLIEDIEDGTFSKL-----SLLEELTLAENQLLRLPVLPPKLTLLNAKHNKIKSKG 203
Query: 371 Y---SFEKLRKKYFKDVD 415
+F+KL K F +D
Sbjct: 204 IKANTFKKLNKLSFLYLD 221
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,332,218
Number of Sequences: 369166
Number of extensions: 642634
Number of successful extensions: 2126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2122
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3833118120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)