Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_K24
(393 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5AD73|SNX41_CANAL Sorting nexin-41 35 0.071
sp|Q9K974|RECN_BACHD DNA repair protein recN (Recombination... 32 0.60
sp|O67247|YB87_AQUAE Hypothetical protein AQ_1187 31 0.78
sp|P24268|CATD_RAT Cathepsin D precursor [Contains: Catheps... 31 1.0
sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 in... 30 1.3
sp|P08987|GTFB_STRMU Glucosyltransferase-I precursor (GTF-I... 30 1.3
sp|P18242|CATD_MOUSE Cathepsin D precursor 29 3.0
sp|P36420|SYV_LACCA Valyl-tRNA synthetase (Valine--tRNA lig... 29 3.0
sp|Q9CNC4|LST_PASMU CMP-N-acetylneuraminate-beta-galactosam... 29 3.9
sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ... 29 3.9
>sp|Q5AD73|SNX41_CANAL Sorting nexin-41
Length = 681
Score = 34.7 bits (78), Expect = 0.071
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 65 KTIPLRRFSTVKSLLNEILDLVKDLLKLESDPAKLQRISKLLNDLN-STGYSFEKLRKKY 241
K + RR+S KSL + +L L L+ + P K +S LLN +N S S ++RK+Y
Sbjct: 145 KIVVKRRYSEFKSLRDNLLKLFPTLI-IPPIPEKHSILSYLLNTINHSHEISIIEMRKRY 203
Query: 242 FK 247
FK
Sbjct: 204 FK 205
>sp|Q9K974|RECN_BACHD DNA repair protein recN (Recombination protein N)
Length = 565
Score = 31.6 bits (70), Expect = 0.60
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 LLNEILDLVKDLL-KLESDPAKLQRISKLLNDLNSTGYSFEKLRKKYFKDVD 256
LL E + ++D L KLE DP +L+ I L++L +KL++KY VD
Sbjct: 277 LLEEAMFTLRDYLDKLEFDPTRLEMIESRLHEL-------QKLKRKYGDSVD 321
>sp|O67247|YB87_AQUAE Hypothetical protein AQ_1187
Length = 167
Score = 31.2 bits (69), Expect = 0.78
Identities = 14/43 (32%), Positives = 28/43 (65%)
Frame = +2
Query: 113 EILDLVKDLLKLESDPAKLQRISKLLNDLNSTGYSFEKLRKKY 241
+++++ ++LLK+E K Q SK+++ LN+ GY ++ KY
Sbjct: 25 KLVNIYRELLKVEETLKKGQINSKVIDKLNALGYPIYQIYSKY 67
>sp|P24268|CATD_RAT Cathepsin D precursor [Contains: Cathepsin D 12 kDa light chain;
Cathepsin D 9 kDa light chain; Cathepsin D 34 kDa heavy
chain; Cathepsin D 30 kDa heavy chain]
Length = 407
Score = 30.8 bits (68), Expect = 1.0
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Frame = +2
Query: 35 IVGGLLDTLEKT---IPLRRFSTVKSLLNEILDLVKDLL--------KLESDPAKLQRIS 181
++ GLLD IPLR+F++++ + E+ V+DL+ ++S P + +S
Sbjct: 9 LILGLLDASSSALIRIPLRKFTSIRRTMTEVGGSVEDLILKGPITKYSMQSSPRTKEPVS 68
Query: 182 KLLNDLNSTGY 214
+LL + Y
Sbjct: 69 ELLKNYLDAQY 79
>sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 intein; Mja pol-2 intein]
Length = 1634
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 113 EILDLVKDLLKLESDPAKLQRISKLLNDLNSTGYSFEKLRKK 238
+I + + DL++ D K IS++L N +SF+K+ KK
Sbjct: 902 KIGEYIDDLMRKHKDKIKFSGISEILETKNLKTFSFDKITKK 943
>sp|P08987|GTFB_STRMU Glucosyltransferase-I precursor (GTF-I) (Dextransucrase) (Sucrose
6-glucosyltransferase)
Length = 1476
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 26 LTNIVGGLLDTLEKTIPLRRFSTVKSLLNEILDLVKDLLKLESDPAKLQRISKLLNDLNS 205
+TN + D +T + +S +++ +E+ DL++D++K E +P N
Sbjct: 535 ITNSLVNRTDDNAETAAVPSYSFIRAHDSEVQDLIRDIIKAEINP-------------NV 581
Query: 206 TGYSF--EKLRKKY 241
GYSF E+++K +
Sbjct: 582 VGYSFTMEEIKKAF 595
>sp|P18242|CATD_MOUSE Cathepsin D precursor
Length = 410
Score = 29.3 bits (64), Expect = 3.0
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Frame = +2
Query: 71 IPLRRFSTVKSLLNEILDLVKDLL--------KLESDPAKLQRISKLLNDLNSTGY 214
IPLR+F++++ + E+ V+DL+ ++S P + +S+LL + Y
Sbjct: 24 IPLRKFTSIRRTMTEVGGSVEDLILKGPITKYSMQSSPKTTEPVSELLKNYLDAQY 79
>sp|P36420|SYV_LACCA Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
Length = 901
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +2
Query: 89 STVKSLLNEILDLVKDLLKLESDPAKL-QRISKLLNDLNSTGY 214
+T+ LNE++DL ++ KL D KL Q I+++ LN+ G+
Sbjct: 823 ATIFVPLNELIDLDEEKAKLTKDAKKLEQEIARIDKKLNNQGF 865
>sp|Q9CNC4|LST_PASMU CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase (Beta-galactoside
alpha-2,3-sialyltransferase) (Alpha 2,3-ST)
(Lipooligosaccharide sialyltransferase)
Length = 308
Score = 28.9 bits (63), Expect = 3.9
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 86 FSTVKSLLNEILDLVKDLLKLESDPAKLQRISKLLNDLNSTGYSFEKLR 232
F+ + + + +++V + L + DPA LQR KL+N L YS + LR
Sbjct: 104 FNLLNTFDDGTINIVPNSLFYQDDPATLQR--KLINVLLGNKYSIQSLR 150
>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase
Length = 864
Score = 28.9 bits (63), Expect = 3.9
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 92 TVKSLLNEILDLVKDLLKLESDPAKLQRISKLLNDLNSTGYSFEKLRKKYFK 247
TV+ +L+L KD KLE + ++ + K + D+ +EK R +Y K
Sbjct: 191 TVEEKRARVLELKKDKEKLEDE---IKNLEKRIKDIKDQFDEYEKKRNQYLK 239
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,457,825
Number of Sequences: 369166
Number of extensions: 572487
Number of successful extensions: 2047
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2045
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)