Planaria EST Database

DrC_00436

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00436
         (1303 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O16797|RL3_DROME  60S ribosomal protein L3                     426   e-119
sp|P21531|RL3_RAT  60S ribosomal protein L3 (L4)                  397   e-110
sp|P27659|RL3_MOUSE  60S ribosomal protein L3 (J1 protein)        396   e-110
sp|P39023|RL3_HUMAN  60S ribosomal protein L3 (HIV-1 TAR RNA...   393   e-109
sp|P39872|RL3_BOVIN  60S ribosomal protein L3                     392   e-108
sp|P49149|RL3_TOXCA  60S ribosomal protein L3                     391   e-108
sp|Q92901|RL3L_HUMAN  60S ribosomal protein L3-like               377   e-104
sp|P50880|RL3_CAEEL  60S ribosomal protein L3                     373   e-103
sp|Q9NBK4|RL3_CAEBR  60S ribosomal protein L3                     372   e-102
sp|P35684|RL3_ORYSA  60S ribosomal protein L3                     325   2e-88

>sp|O16797|RL3_DROME 60S ribosomal protein L3
          Length = 416

 Score =  426 bits (1096), Expect = e-119
 Identities = 206/310 (66%), Positives = 247/310 (79%), Gaps = 4/310 (1%)
 Frame = +2

Query: 305  VNISVKNVEDD----FIKIGINQTRRHLPRSSKKWTEDRGKKLIELDFNKMKRYCKVIRV 472
            VN+  +++ ++    F K      ++   ++SKKWT+D GKK IE DF KM RYCKVIRV
Sbjct: 103  VNVWAQHLSEECRRRFYKNWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRV 162

Query: 473  IAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGI 652
            IAH+Q++++ QRQKKAH+ EIQLNGG++ +KV WAREHLEK + +SNVF  +EMIDC+G+
Sbjct: 163  IAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGV 222

Query: 653  TKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINK 832
            TKGKGF+GVTSRWHTKKL RKTHKGLRKVACIG WHP+RVS  VARAGQKGYHHRTEINK
Sbjct: 223  TKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINK 282

Query: 833  KIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGC 1012
            KIYRIG G+ T+      D   IK NAST+YDLT K+ITPMGGFPHYGEVNNDF+MIKGC
Sbjct: 283  KIYRIGAGIHTK------DGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGC 336

Query: 1013 CMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDR 1192
            C+G+KKR+ITLRKSL    K+  +E+I LKFIDTSSK GHGRFQT  +K  FMGPLKKDR
Sbjct: 337  CIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDR 396

Query: 1193 LRQEAKEIAA 1222
            L++EA    A
Sbjct: 397  LKEEAAATTA 406


 Score =  157 bits (397), Expect = 6e-38
 Identities = 77/131 (58%), Positives = 89/131 (67%)
 Frame = +1

Query: 1   SAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVRELNSQTNK 180
           SAPRHGS+ F P            +FP D  S PVHLT F+ YKAG T +VRE +   +K
Sbjct: 7   SAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSK 66

Query: 181 TNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKS 360
            N  KEV + VT+LETPPM++VG VGYIETP GLR    VW +HLSEECRRRFYKNWYKS
Sbjct: 67  INK-KEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKS 125

Query: 361 NKKAFTSIIQK 393
            KKAFT   +K
Sbjct: 126 KKKAFTKASKK 136

>sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4)
          Length = 403

 Score =  397 bits (1019), Expect = e-110
 Identities = 190/289 (65%), Positives = 231/289 (79%)
 Frame = +2

Query: 338  FIKIGINQTRRHLPRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKK 517
            F K      ++   +  KKW +D GKK +E DFN MK+YC+VIR+IAHTQM++L  RQKK
Sbjct: 118  FYKNWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKK 177

Query: 518  AHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHT 697
            AH+ EIQ+NGGTV+ K+DWARE LE+QV ++ VF  +EMID IG+TKGKG++GVTSRWHT
Sbjct: 178  AHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHT 237

Query: 698  KKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTE 877
            KKL RKTH+GLRKVACIG WHPARV+F+VARAGQKGYHHRTEINKKIY+IG G   +   
Sbjct: 238  KKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIK--- 294

Query: 878  AQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSL 1057
               D   IK NASTDYDL+ K+I P+GGF HYGEV NDFIM+KGC +G KKR++TLRKSL
Sbjct: 295  ---DGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSL 351

Query: 1058 HTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDRLRQE 1204
                K+R +E+I LKFIDT+SKFGHGRFQT +EK+ FMGPLKKDR+ +E
Sbjct: 352  LVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400


 Score =  174 bits (440), Expect = 7e-43
 Identities = 83/131 (63%), Positives = 100/131 (76%)
 Frame = +1

Query: 1   SAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVRELNSQTNK 180
           SAPRHGSLGFLP            SFP D PS PVHLT+FL YKAG T +VRE++   +K
Sbjct: 7   SAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSK 66

Query: 181 TNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKS 360
            N  KEV + VTI+ETPPM++VG+VGY+ETPRGLRTFKTV+ EH+S+EC+RRFYKNW+KS
Sbjct: 67  VNK-KEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKS 125

Query: 361 NKKAFTSIIQK 393
            KKAFT   +K
Sbjct: 126 KKKAFTKYCKK 136

>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein)
          Length = 403

 Score =  396 bits (1018), Expect = e-110
 Identities = 190/289 (65%), Positives = 230/289 (79%)
 Frame = +2

Query: 338  FIKIGINQTRRHLPRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKK 517
            F K      ++   +  KKW +D GKK +E DFN MK+YC+VIR+IAHTQM++L  RQKK
Sbjct: 118  FYKNWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKK 177

Query: 518  AHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHT 697
            AH+ EIQ+NGGTV+ K+DWARE LE+QV ++ VF  +EMID IG+TKGKG++GVTSRWHT
Sbjct: 178  AHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHT 237

Query: 698  KKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTE 877
            KKL RKTH+GLRKVACIG WHPARV+F VARAGQKGYHHRTEINKKIY+IG G   +   
Sbjct: 238  KKLPRKTHRGLRKVACIGAWHPARVAFTVARAGQKGYHHRTEINKKIYKIGQGYLIK--- 294

Query: 878  AQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSL 1057
               D   IK NASTDYDL+ K+I P+GGF HYGEV NDFIM+KGC +G KKR++TLRKSL
Sbjct: 295  ---DGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSL 351

Query: 1058 HTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDRLRQE 1204
                K+R +E+I LKFIDT+SKFGHGRFQT +EK+ FMGPLKKDR+ +E
Sbjct: 352  LVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400


 Score =  171 bits (432), Expect = 6e-42
 Identities = 82/131 (62%), Positives = 99/131 (75%)
 Frame = +1

Query: 1   SAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVRELNSQTNK 180
           SAPRHGSLGFLP            SFP D  S PVHLT+FL YKAG T +VRE++   +K
Sbjct: 7   SAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVDRPGSK 66

Query: 181 TNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKS 360
            N  KEV + VTI+ETPPM++VG+VGY+ETPRGLRTFKTV+ EH+S+EC+RRFYKNW+KS
Sbjct: 67  VNK-KEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKS 125

Query: 361 NKKAFTSIIQK 393
            KKAFT   +K
Sbjct: 126 KKKAFTKYCKK 136

>sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA binding protein B) (TARBP-B)
          Length = 403

 Score =  393 bits (1009), Expect = e-109
 Identities = 188/289 (65%), Positives = 231/289 (79%)
 Frame = +2

Query: 338  FIKIGINQTRRHLPRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKK 517
            F K      ++   +  KKW ++ GKK +E DF+ MK+YC+VIRVIAHTQM++L  RQKK
Sbjct: 118  FYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKK 177

Query: 518  AHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHT 697
            AH+ EIQ+NGGTV+ K+DWARE LE+QV ++ VF  +EMID IG+TKGKG++GVTSRWHT
Sbjct: 178  AHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHT 237

Query: 698  KKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTE 877
            KKL RKTH+GLRKVACIG WHPARV+F+VARAGQKGYHHRTEINKKIY+IG G   +   
Sbjct: 238  KKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIK--- 294

Query: 878  AQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSL 1057
               D   IK NASTDYDL+ K+I P+GGF HYGEV NDF+M+KGC +G KKR++TLRKSL
Sbjct: 295  ---DGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSL 351

Query: 1058 HTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDRLRQE 1204
                K+R +E+I LKFIDT+SKFGHGRFQT +EK+ FMGPLKKDR+ +E
Sbjct: 352  LVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400


 Score =  174 bits (440), Expect = 7e-43
 Identities = 83/131 (63%), Positives = 100/131 (76%)
 Frame = +1

Query: 1   SAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVRELNSQTNK 180
           SAPRHGSLGFLP            SFP D PS PVHLT+FL YKAG T +VRE++   +K
Sbjct: 7   SAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSK 66

Query: 181 TNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKS 360
            N  KEV + VTI+ETPPM++VG+VGY+ETPRGLRTFKTV+ EH+S+EC+RRFYKNW+KS
Sbjct: 67  VNK-KEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKS 125

Query: 361 NKKAFTSIIQK 393
            KKAFT   +K
Sbjct: 126 KKKAFTKYCKK 136

>sp|P39872|RL3_BOVIN 60S ribosomal protein L3
          Length = 403

 Score =  392 bits (1006), Expect = e-108
 Identities = 188/289 (65%), Positives = 230/289 (79%)
 Frame = +2

Query: 338  FIKIGINQTRRHLPRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKK 517
            F K      ++   +  KKW +  GKK +E DF+ MK+YC+VIRVIAHTQM++L  RQKK
Sbjct: 118  FYKNWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKK 177

Query: 518  AHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHT 697
            AH+ E+Q+NGGTV+ K+DWARE LE+QV +S VF  +EMID IG+TKGKG++GVTSRWHT
Sbjct: 178  AHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHT 237

Query: 698  KKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTE 877
            KKL RKTH+GLRKVACIG WHPARV+F+VARAGQKGYHHRTEINKKIY+IG G   +   
Sbjct: 238  KKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIK--- 294

Query: 878  AQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSL 1057
               D   IK NASTDYDL+ K+I P+GGF HYGEV NDF+M+KGC +G KKR++TLRKSL
Sbjct: 295  ---DGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSL 351

Query: 1058 HTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDRLRQE 1204
                K+R +E+I LKFIDT+SKFGHGRFQT +EK+ FMGPLKKDR+ +E
Sbjct: 352  LVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKE 400


 Score =  171 bits (432), Expect = 6e-42
 Identities = 82/131 (62%), Positives = 99/131 (75%)
 Frame = +1

Query: 1   SAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVRELNSQTNK 180
           SAPRHGSLGFLP            SFP D  S PVHLT+FL YKAG T +VRE++   +K
Sbjct: 7   SAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVDRPGSK 66

Query: 181 TNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKS 360
            N  KEV + VTI+ETPPM+IVG+VGY+ETPRGLRTFKT++ EH+S+EC+RRFYKNW+KS
Sbjct: 67  VNK-KEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKS 125

Query: 361 NKKAFTSIIQK 393
            KKAFT   +K
Sbjct: 126 KKKAFTKYCKK 136

>sp|P49149|RL3_TOXCA 60S ribosomal protein L3
          Length = 402

 Score =  391 bits (1005), Expect = e-108
 Identities = 187/288 (64%), Positives = 223/288 (77%)
 Frame = +2

Query: 338  FIKIGINQTRRHLPRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKK 517
            F K      ++   + +KKW ++ G+K IE D NKMK+YC  IRVIAHTQMK++  R+KK
Sbjct: 118  FYKNWHTSKKKAFQKHAKKWQDEDGRKSIEADLNKMKKYCSKIRVIAHTQMKVMKHREKK 177

Query: 518  AHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHT 697
            AHI EIQ+NGGTV+ KVDWAREHLEKQV + +VF+ +EMIDCIG+TKGKGF+GVTSRWHT
Sbjct: 178  AHIMEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGVTKGKGFKGVTSRWHT 237

Query: 698  KKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTE 877
            KKL RKTHKGLRKVACIG WHP+RV F VARAGQKGYHHRTE+NKKIYR+G    T++  
Sbjct: 238  KKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGKSCLTEEG- 296

Query: 878  AQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSL 1057
                    K N  TDYD+T K++ PMGGFPHYG VN DF+MI+GCC+G+KKR ITLRKSL
Sbjct: 297  --------KKNGGTDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSL 348

Query: 1058 HTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDRLRQ 1201
                K+   E+I LK+IDTSSKFGHGRFQT  EKR FMG LKKD + +
Sbjct: 349  IVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLKKDLIAE 396


 Score =  157 bits (396), Expect = 8e-38
 Identities = 74/131 (56%), Positives = 93/131 (70%)
 Frame = +1

Query: 1   SAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVRELNSQTNK 180
           SAPRHGS+GF P            +FP D P+ P+HLT+F+++KAG T +VRE++   +K
Sbjct: 7   SAPRHGSMGFTPKKRSKRHRGKVKAFPKDDPTKPIHLTAFIAFKAGMTHIVREVDKPGSK 66

Query: 181 TNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKS 360
            N  KEV + VTI E PPM+IVG+VGYI+TPRG R FKTVW EHLSE+CR RFYKNW+ S
Sbjct: 67  VNK-KEVVEAVTIFEAPPMVIVGIVGYIDTPRGPRQFKTVWAEHLSEDCRGRFYKNWHTS 125

Query: 361 NKKAFTSIIQK 393
            KKAF    +K
Sbjct: 126 KKKAFQKHAKK 136

>sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like
          Length = 407

 Score =  377 bits (969), Expect = e-104
 Identities = 185/292 (63%), Positives = 222/292 (76%)
 Frame = +2

Query: 338  FIKIGINQTRRHLPRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKK 517
            F K      ++   ++ K+W +  GKK ++ DF  MK+YCKVIRVI HTQMK+L  RQKK
Sbjct: 118  FYKDWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKK 177

Query: 518  AHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHT 697
            AHI EIQLNGGTV+ KV WA+  LEKQV + +VFS +E+ID I +TKG+G +GVTSRWHT
Sbjct: 178  AHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHT 237

Query: 698  KKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTE 877
            KKL RKTHKGLRKVACIG WHPARV  ++ARAGQKGYHHRTE+NKKI+RIG G   +   
Sbjct: 238  KKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHME--- 294

Query: 878  AQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSL 1057
               D   +K NAST YD+T K+ITP+GGFPHYGEVNNDF+M+KGC  G KKR+ITLRKSL
Sbjct: 295  ---DGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSL 351

Query: 1058 HTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDRLRQEAKE 1213
               H ++ +E I LKFIDT+SKFGHGRFQT+ EKR FMGP KK  L +E  E
Sbjct: 352  LVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKK-HLEKETPE 402


 Score =  155 bits (391), Expect = 3e-37
 Identities = 74/131 (56%), Positives = 96/131 (73%)
 Frame = +1

Query: 1   SAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVRELNSQTNK 180
           SAPRHG LGFLP            ++P D PS PVHLT+FL YKAG T  +RE++    K
Sbjct: 7   SAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLK 66

Query: 181 TNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKS 360
            +  +EV + VTI+ETPP+++VGVVGY+ TPRGLR+FKT++ EHLS+ECRRRFYK+W+KS
Sbjct: 67  ISKREEV-EAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKS 125

Query: 361 NKKAFTSIIQK 393
            KKAFT   ++
Sbjct: 126 KKKAFTKACKR 136

>sp|P50880|RL3_CAEEL 60S ribosomal protein L3
          Length = 401

 Score =  373 bits (957), Expect = e-103
 Identities = 184/283 (65%), Positives = 220/283 (77%), Gaps = 1/283 (0%)
 Frame = +2

Query: 365  RRHLPRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLN 544
            ++   + +KKW ++ GKKLIE DF K+K+YC  IRVIAHTQMK+L +RQKKAH+ EIQ+N
Sbjct: 127  KKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVN 186

Query: 545  GGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHK 724
            GGT+  KVDWAREHLEKQV +  VF+ +EMID IG+T+G GF+GVTSRWHTKKL RKTHK
Sbjct: 187  GGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHK 246

Query: 725  GLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIK 904
            GLRKVACIG WHP+RV+F VARAGQKG+HHRT IN KIYRIG    T++          K
Sbjct: 247  GLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG---------K 297

Query: 905  GNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMM 1084
             N ST++DLT K ITPMGGFP YG VN D+IM++G  +G KKRLITLRKSL T  K+   
Sbjct: 298  NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAH 357

Query: 1085 EEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDRLRQ-EAK 1210
            E+I LK+IDTSSK GHGRFQT+ EKR FMG LK+D L + EAK
Sbjct: 358  EKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAEAEAK 400


 Score =  149 bits (376), Expect = 2e-35
 Identities = 71/131 (54%), Positives = 88/131 (67%)
 Frame = +1

Query: 1   SAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVRELNSQTNK 180
           SAPRHG +GF P            +FP D  S P+HLT+FL YKAG T +VR+++   +K
Sbjct: 7   SAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGSK 66

Query: 181 TNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKS 360
            N  KEV + VTI+ETPPM+I GV GY++TP+G R   T+W EHLSEE RRRFY NW KS
Sbjct: 67  VNK-KEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125

Query: 361 NKKAFTSIIQK 393
            KKAFT   +K
Sbjct: 126 KKKAFTKYAKK 136

>sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3
          Length = 401

 Score =  372 bits (955), Expect = e-102
 Identities = 180/279 (64%), Positives = 216/279 (77%)
 Frame = +2

Query: 365  RRHLPRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLN 544
            ++   + +KKW ++ GKKLIE DF K+K+YC  IRVIAHTQMK+L +RQKKAH+ EIQ+N
Sbjct: 127  KKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQIN 186

Query: 545  GGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHK 724
            GGT+  KVDWAREHLEKQ+ +  VFS +EMID IG+TKG GF+GVTSRWHTKKL RKTHK
Sbjct: 187  GGTIEQKVDWAREHLEKQIQVDTVFSQDEMIDTIGVTKGHGFKGVTSRWHTKKLPRKTHK 246

Query: 725  GLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIK 904
            GLRKVACIG WHP+RV+F VARAGQKG+HHRT IN KIYRIG    T++          K
Sbjct: 247  GLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG---------K 297

Query: 905  GNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMM 1084
             N ST++DLT K I PMGGFP YG VN D++M++G  +G KKRLITLRKSL T  K+   
Sbjct: 298  NNGSTEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAH 357

Query: 1085 EEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDRLRQ 1201
            E+I LK+IDTSSK GHGRFQT+ EKR FMG LK+D L +
Sbjct: 358  EKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396


 Score =  148 bits (374), Expect = 3e-35
 Identities = 71/131 (54%), Positives = 88/131 (67%)
 Frame = +1

Query: 1   SAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVRELNSQTNK 180
           SAPRHG +GF P            +FP D  S P+HLT+FL YKAG T +VR+++   +K
Sbjct: 7   SAPRHGHMGFTPKKRSRTYRGRIKAFPKDDASKPIHLTAFLGYKAGMTHIVRDVDKPGSK 66

Query: 181 TNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKS 360
            N  KEV + V+I+ETPPM+I GV GYI+TP+G R   T+W EHLSEE RRRFY NW KS
Sbjct: 67  VNK-KEVVEAVSIIETPPMVIAGVTGYIDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125

Query: 361 NKKAFTSIIQK 393
            KKAFT   +K
Sbjct: 126 KKKAFTKYAKK 136

>sp|P35684|RL3_ORYSA 60S ribosomal protein L3
          Length = 389

 Score =  325 bits (833), Expect = 2e-88
 Identities = 159/289 (55%), Positives = 207/289 (71%), Gaps = 1/289 (0%)
 Frame = +2

Query: 320  KNVEDDFIKIGINQTRRHLPRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQM-KM 496
            + V   F K      ++   + + K+  D GKK I++   KMK+Y  ++RVIAHTQ+ KM
Sbjct: 112  EEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKM 171

Query: 497  LNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEG 676
               +QKKAH+ EIQ+NGGT+++KVD+  +  EK++ +  VF  +EMID IG+TKGKG+EG
Sbjct: 172  KGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEG 231

Query: 677  VTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLG 856
            V +RW   +L RKTH+GLRKVACIG WHPARVS+ VARAGQ GYHHRTE+NKK+Y+I  G
Sbjct: 232  VVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI--G 289

Query: 857  VKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRL 1036
               Q++ A          A T++D T K+ITPMGGFPHYG V  D++MIKGCC+G KKR+
Sbjct: 290  KSGQESHA----------ACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRV 339

Query: 1037 ITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLK 1183
            +TLR+SL     +  +EEI LKFIDTSSKFGHGRFQT+DEK+ F G LK
Sbjct: 340  VTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388


 Score =  150 bits (380), Expect = 6e-36
 Identities = 74/131 (56%), Positives = 89/131 (67%)
 Frame = +1

Query: 7   PRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVRELNSQTNKTN 186
           PRHGSLGFLP            SFP D  S P HLTSF+ YKAG T +VRE+    +K +
Sbjct: 9   PRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGSKLH 68

Query: 187 NGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKSNK 366
             KE  + VTI+ETPP++IVG+V Y++TPRGLR+  +VW +HLSEE RRRFYKNW KS K
Sbjct: 69  K-KETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKK 127

Query: 367 KAFTSIIQKVD 399
           KAFT    K D
Sbjct: 128 KAFTKYALKYD 138

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,902,700
Number of Sequences: 369166
Number of extensions: 2781553
Number of successful extensions: 7210
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7127
length of database: 68,354,980
effective HSP length: 114
effective length of database: 47,295,190
effective search space used: 15087165610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00436

  1. Dr_sW_011_H06
  2. Dr_sW_013_L23
  3. Dr_sW_006_J10
  4. Dr_sW_002_G02
  5. Dr_sW_028_B01
  6. Dr_sW_027_N24
  7. Dr_sW_027_O19
  8. Dr_sW_006_F11
  9. Dr_sW_003_O02
  10. Dr_sW_028_J23
  11. Dr_sW_002_H24
  12. Dr_sW_026_G06
  13. Dr_sW_012_B09