Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_B01
(692 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O16797|RL3_DROME 60S ribosomal protein L3 354 1e-97
sp|P49149|RL3_TOXCA 60S ribosomal protein L3 334 2e-91
sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4) 333 3e-91
sp|P39872|RL3_BOVIN 60S ribosomal protein L3 333 3e-91
sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA... 332 4e-91
sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein) 332 4e-91
sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like 326 4e-89
sp|P50880|RL3_CAEEL 60S ribosomal protein L3 315 9e-86
sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3 315 9e-86
sp|P14126|RL3_YEAST 60S ribosomal protein L3 (YL1) (RP1) (T... 295 8e-80
>sp|O16797|RL3_DROME 60S ribosomal protein L3
Length = 416
Score = 354 bits (909), Expect = 1e-97
Identities = 168/230 (73%), Positives = 193/230 (83%)
Frame = +3
Query: 3 MLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFE 182
++ QRQKKAH+ EIQLNGG++ +KV WAREHLEK + +SNVF +EMIDC+G+TKGKGF+
Sbjct: 170 LIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFK 229
Query: 183 GVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGL 362
GVTSRWHTKKL RKTHKGLRKVACIG WHP+RVS VARAGQKGYHHRTEINKKIYRIG
Sbjct: 230 GVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGA 289
Query: 363 GVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKR 542
G+ T+ D IK NAST+YDLT K+ITPMGGFPHYGEVNNDF+MIKGCC+G+KKR
Sbjct: 290 GIHTK------DGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKR 343
Query: 543 LITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLK 692
+ITLRKSL K+ +E+I LKFIDTSSK GHGRFQT +K FMGPLK
Sbjct: 344 IITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393
>sp|P49149|RL3_TOXCA 60S ribosomal protein L3
Length = 402
Score = 334 bits (856), Expect = 2e-91
Identities = 159/230 (69%), Positives = 185/230 (80%)
Frame = +3
Query: 3 MLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFE 182
++ R+KKAHI EIQ+NGGTV+ KVDWAREHLEKQV + +VF+ +EMIDCIG+TKGKGF+
Sbjct: 170 VMKHREKKAHIMEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGVTKGKGFK 229
Query: 183 GVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGL 362
GVTSRWHTKKL RKTHKGLRKVACIG WHP+RV F VARAGQKGYHHRTE+NKKIYR+G
Sbjct: 230 GVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGK 289
Query: 363 GVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKR 542
T++ K N TDYD+T K++ PMGGFPHYG VN DF+MI+GCC+G+KKR
Sbjct: 290 SCLTEEG---------KKNGGTDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKR 340
Query: 543 LITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLK 692
ITLRKSL K+ E+I LK+IDTSSKFGHGRFQT EKR FMG LK
Sbjct: 341 PITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLK 390
>sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4)
Length = 403
Score = 333 bits (853), Expect = 3e-91
Identities = 160/230 (69%), Positives = 190/230 (82%)
Frame = +3
Query: 3 MLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFE 182
+L RQKKAH+ EIQ+NGGTV+ K+DWARE LE+QV ++ VF +EMID IG+TKGKG++
Sbjct: 170 LLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYK 229
Query: 183 GVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGL 362
GVTSRWHTKKL RKTH+GLRKVACIG WHPARV+F+VARAGQKGYHHRTEINKKIY+IG
Sbjct: 230 GVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQ 289
Query: 363 GVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKR 542
G + D IK NASTDYDL+ K+I P+GGF HYGEV NDFIM+KGC +G KKR
Sbjct: 290 GYLIK------DGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKR 343
Query: 543 LITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLK 692
++TLRKSL K+R +E+I LKFIDT+SKFGHGRFQT +EK+ FMGPLK
Sbjct: 344 VLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393
>sp|P39872|RL3_BOVIN 60S ribosomal protein L3
Length = 403
Score = 333 bits (853), Expect = 3e-91
Identities = 159/230 (69%), Positives = 190/230 (82%)
Frame = +3
Query: 3 MLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFE 182
+L RQKKAH+ E+Q+NGGTV+ K+DWARE LE+QV +S VF +EMID IG+TKGKG++
Sbjct: 170 LLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYK 229
Query: 183 GVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGL 362
GVTSRWHTKKL RKTH+GLRKVACIG WHPARV+F+VARAGQKGYHHRTEINKKIY+IG
Sbjct: 230 GVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQ 289
Query: 363 GVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKR 542
G + D IK NASTDYDL+ K+I P+GGF HYGEV NDF+M+KGC +G KKR
Sbjct: 290 GYLIK------DGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKR 343
Query: 543 LITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLK 692
++TLRKSL K+R +E+I LKFIDT+SKFGHGRFQT +EK+ FMGPLK
Sbjct: 344 VLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 393
>sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA binding protein B)
(TARBP-B)
Length = 403
Score = 332 bits (852), Expect = 4e-91
Identities = 159/230 (69%), Positives = 190/230 (82%)
Frame = +3
Query: 3 MLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFE 182
+L RQKKAH+ EIQ+NGGTV+ K+DWARE LE+QV ++ VF +EMID IG+TKGKG++
Sbjct: 170 LLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYK 229
Query: 183 GVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGL 362
GVTSRWHTKKL RKTH+GLRKVACIG WHPARV+F+VARAGQKGYHHRTEINKKIY+IG
Sbjct: 230 GVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQ 289
Query: 363 GVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKR 542
G + D IK NASTDYDL+ K+I P+GGF HYGEV NDF+M+KGC +G KKR
Sbjct: 290 GYLIK------DGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKR 343
Query: 543 LITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLK 692
++TLRKSL K+R +E+I LKFIDT+SKFGHGRFQT +EK+ FMGPLK
Sbjct: 344 VLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393
>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein)
Length = 403
Score = 332 bits (852), Expect = 4e-91
Identities = 160/230 (69%), Positives = 189/230 (82%)
Frame = +3
Query: 3 MLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFE 182
+L RQKKAH+ EIQ+NGGTV+ K+DWARE LE+QV ++ VF +EMID IG+TKGKG++
Sbjct: 170 LLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYK 229
Query: 183 GVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGL 362
GVTSRWHTKKL RKTH+GLRKVACIG WHPARV+F VARAGQKGYHHRTEINKKIY+IG
Sbjct: 230 GVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFTVARAGQKGYHHRTEINKKIYKIGQ 289
Query: 363 GVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKR 542
G + D IK NASTDYDL+ K+I P+GGF HYGEV NDFIM+KGC +G KKR
Sbjct: 290 GYLIK------DGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKR 343
Query: 543 LITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLK 692
++TLRKSL K+R +E+I LKFIDT+SKFGHGRFQT +EK+ FMGPLK
Sbjct: 344 VLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393
>sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like
Length = 407
Score = 326 bits (835), Expect = 4e-89
Identities = 157/230 (68%), Positives = 184/230 (80%)
Frame = +3
Query: 3 MLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFE 182
+L RQKKAHI EIQLNGGTV+ KV WA+ LEKQV + +VFS +E+ID I +TKG+G +
Sbjct: 170 LLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVK 229
Query: 183 GVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGL 362
GVTSRWHTKKL RKTHKGLRKVACIG WHPARV ++ARAGQKGYHHRTE+NKKI+RIG
Sbjct: 230 GVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGR 289
Query: 363 GVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKR 542
G + D +K NAST YD+T K+ITP+GGFPHYGEVNNDF+M+KGC G KKR
Sbjct: 290 GPHME------DGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKR 343
Query: 543 LITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLK 692
+ITLRKSL H ++ +E I LKFIDT+SKFGHGRFQT+ EKR FMGP K
Sbjct: 344 VITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393
>sp|P50880|RL3_CAEEL 60S ribosomal protein L3
Length = 401
Score = 315 bits (806), Expect = 9e-86
Identities = 154/230 (66%), Positives = 180/230 (78%)
Frame = +3
Query: 3 MLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFE 182
+L +RQKKAH+ EIQ+NGGT+ KVDWAREHLEKQV + VF+ +EMID IG+T+G GF+
Sbjct: 170 ILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFK 229
Query: 183 GVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGL 362
GVTSRWHTKKL RKTHKGLRKVACIG WHP+RV+F VARAGQKG+HHRT IN KIYRIG
Sbjct: 230 GVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGK 289
Query: 363 GVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKR 542
T++ K N ST++DLT K ITPMGGFP YG VN D+IM++G +G KKR
Sbjct: 290 SALTEEG---------KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKR 340
Query: 543 LITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLK 692
LITLRKSL T K+ E+I LK+IDTSSK GHGRFQT+ EKR FMG LK
Sbjct: 341 LITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390
>sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3
Length = 401
Score = 315 bits (806), Expect = 9e-86
Identities = 153/230 (66%), Positives = 179/230 (77%)
Frame = +3
Query: 3 MLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFE 182
+L +RQKKAH+ EIQ+NGGT+ KVDWAREHLEKQ+ + VFS +EMID IG+TKG GF+
Sbjct: 170 ILRRRQKKAHLVEIQINGGTIEQKVDWAREHLEKQIQVDTVFSQDEMIDTIGVTKGHGFK 229
Query: 183 GVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGL 362
GVTSRWHTKKL RKTHKGLRKVACIG WHP+RV+F VARAGQKG+HHRT IN KIYRIG
Sbjct: 230 GVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGK 289
Query: 363 GVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKR 542
T++ K N ST++DLT K I PMGGFP YG VN D++M++G +G KKR
Sbjct: 290 SALTEEG---------KNNGSTEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKR 340
Query: 543 LITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLK 692
LITLRKSL T K+ E+I LK+IDTSSK GHGRFQT+ EKR FMG LK
Sbjct: 341 LITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390
>sp|P14126|RL3_YEAST 60S ribosomal protein L3 (YL1) (RP1) (Trichodermin resistance
protein)
Length = 387
Score = 295 bits (755), Expect = 8e-80
Identities = 141/225 (62%), Positives = 168/225 (74%)
Frame = +3
Query: 18 QKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSR 197
QKKAH+ EIQLNGG++S KVDWAREH EK V++ +VF NEMID I +TKG GFEGVT R
Sbjct: 173 QKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHR 232
Query: 198 WHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQ 377
W TKKL RKTH+GLRKVACIG WHPA V ++VARAGQ+GYH RT IN KIYR+G G
Sbjct: 233 WGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKG---- 288
Query: 378 QTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLR 557
+ N +T +D T K ITPMGGF HYGE+ NDFIM+KGC G +KR++TLR
Sbjct: 289 ---------DDEANGATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLR 339
Query: 558 KSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLK 692
KSL+T ++ +EE+ LK+IDT+SKFG GRFQT EK FMG LK
Sbjct: 340 KSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,160,374
Number of Sequences: 369166
Number of extensions: 1424715
Number of successful extensions: 3717
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3662
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5976365205
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)