Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_N24
(859 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O16797|RL3_DROME 60S ribosomal protein L3 417 e-116
sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4) 392 e-109
sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein) 392 e-109
sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA... 389 e-108
sp|P39872|RL3_BOVIN 60S ribosomal protein L3 387 e-107
sp|P49149|RL3_TOXCA 60S ribosomal protein L3 386 e-107
sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like 373 e-103
sp|P50880|RL3_CAEEL 60S ribosomal protein L3 368 e-101
sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3 367 e-101
sp|P35684|RL3_ORYSA 60S ribosomal protein L3 322 1e-87
>sp|O16797|RL3_DROME 60S ribosomal protein L3
Length = 416
Score = 417 bits (1073), Expect = e-116
Identities = 199/276 (72%), Positives = 230/276 (83%)
Frame = -2
Query: 858 WTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDW 679
WT+D GKK IE DF KM RYCKVIRVIAH+Q++++ QRQKKAH+ EIQLNGG++ +KV W
Sbjct: 137 WTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKW 196
Query: 678 AREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGP 499
AREHLEK + +SNVF +EMIDC+G+TKGKGF+GVTSRWHTKKL RKTHKGLRKVACIG
Sbjct: 197 AREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 256
Query: 498 WHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLT 319
WHP+RVS VARAGQKGYHHRTEINKKIYRIG G+ T+ D IK NAST+YDLT
Sbjct: 257 WHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTK------DGKVIKNNASTEYDLT 310
Query: 318 VKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDT 139
K+ITPMGGFPHYGEVNNDF+MIKGCC+G+KKR+ITLRKSL K+ +E+I LKFIDT
Sbjct: 311 DKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDT 370
Query: 138 SSKFGHGRFQTSDEKRTFMGPLKKDRLRQEAKEIAA 31
SSK GHGRFQT +K FMGPLKKDRL++EA A
Sbjct: 371 SSKMGHGRFQTPADKLAFMGPLKKDRLKEEAAATTA 406
>sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4)
Length = 403
Score = 392 bits (1008), Expect = e-109
Identities = 186/270 (68%), Positives = 224/270 (82%)
Frame = -2
Query: 858 WTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDW 679
W +D GKK +E DFN MK+YC+VIR+IAHTQM++L RQKKAH+ EIQ+NGGTV+ K+DW
Sbjct: 137 WQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDW 196
Query: 678 AREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGP 499
ARE LE+QV ++ VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH+GLRKVACIG
Sbjct: 197 ARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGA 256
Query: 498 WHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLT 319
WHPARV+F+VARAGQKGYHHRTEINKKIY+IG G + D IK NASTDYDL+
Sbjct: 257 WHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIK------DGKLIKNNASTDYDLS 310
Query: 318 VKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDT 139
K+I P+GGF HYGEV NDFIM+KGC +G KKR++TLRKSL K+R +E+I LKFIDT
Sbjct: 311 DKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDT 370
Query: 138 SSKFGHGRFQTSDEKRTFMGPLKKDRLRQE 49
+SKFGHGRFQT +EK+ FMGPLKKDR+ +E
Sbjct: 371 TSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein)
Length = 403
Score = 392 bits (1007), Expect = e-109
Identities = 186/270 (68%), Positives = 223/270 (82%)
Frame = -2
Query: 858 WTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDW 679
W +D GKK +E DFN MK+YC+VIR+IAHTQM++L RQKKAH+ EIQ+NGGTV+ K+DW
Sbjct: 137 WQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDW 196
Query: 678 AREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGP 499
ARE LE+QV ++ VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH+GLRKVACIG
Sbjct: 197 ARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGA 256
Query: 498 WHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLT 319
WHPARV+F VARAGQKGYHHRTEINKKIY+IG G + D IK NASTDYDL+
Sbjct: 257 WHPARVAFTVARAGQKGYHHRTEINKKIYKIGQGYLIK------DGKLIKNNASTDYDLS 310
Query: 318 VKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDT 139
K+I P+GGF HYGEV NDFIM+KGC +G KKR++TLRKSL K+R +E+I LKFIDT
Sbjct: 311 DKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDT 370
Query: 138 SSKFGHGRFQTSDEKRTFMGPLKKDRLRQE 49
+SKFGHGRFQT +EK+ FMGPLKKDR+ +E
Sbjct: 371 TSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
>sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA binding protein B)
(TARBP-B)
Length = 403
Score = 389 bits (998), Expect = e-108
Identities = 184/270 (68%), Positives = 224/270 (82%)
Frame = -2
Query: 858 WTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDW 679
W ++ GKK +E DF+ MK+YC+VIRVIAHTQM++L RQKKAH+ EIQ+NGGTV+ K+DW
Sbjct: 137 WQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDW 196
Query: 678 AREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGP 499
ARE LE+QV ++ VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH+GLRKVACIG
Sbjct: 197 ARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGA 256
Query: 498 WHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLT 319
WHPARV+F+VARAGQKGYHHRTEINKKIY+IG G + D IK NASTDYDL+
Sbjct: 257 WHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIK------DGKLIKNNASTDYDLS 310
Query: 318 VKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDT 139
K+I P+GGF HYGEV NDF+M+KGC +G KKR++TLRKSL K+R +E+I LKFIDT
Sbjct: 311 DKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDT 370
Query: 138 SSKFGHGRFQTSDEKRTFMGPLKKDRLRQE 49
+SKFGHGRFQT +EK+ FMGPLKKDR+ +E
Sbjct: 371 TSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
>sp|P39872|RL3_BOVIN 60S ribosomal protein L3
Length = 403
Score = 387 bits (995), Expect = e-107
Identities = 184/270 (68%), Positives = 223/270 (82%)
Frame = -2
Query: 858 WTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDW 679
W + GKK +E DF+ MK+YC+VIRVIAHTQM++L RQKKAH+ E+Q+NGGTV+ K+DW
Sbjct: 137 WQDADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEVQVNGGTVAEKLDW 196
Query: 678 AREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGP 499
ARE LE+QV +S VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH+GLRKVACIG
Sbjct: 197 ARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGA 256
Query: 498 WHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLT 319
WHPARV+F+VARAGQKGYHHRTEINKKIY+IG G + D IK NASTDYDL+
Sbjct: 257 WHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIK------DGKLIKNNASTDYDLS 310
Query: 318 VKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDT 139
K+I P+GGF HYGEV NDF+M+KGC +G KKR++TLRKSL K+R +E+I LKFIDT
Sbjct: 311 DKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDT 370
Query: 138 SSKFGHGRFQTSDEKRTFMGPLKKDRLRQE 49
+SKFGHGRFQT +EK+ FMGPLKKDR+ +E
Sbjct: 371 TSKFGHGRFQTVEEKKAFMGPLKKDRIAKE 400
>sp|P49149|RL3_TOXCA 60S ribosomal protein L3
Length = 402
Score = 386 bits (991), Expect = e-107
Identities = 183/269 (68%), Positives = 215/269 (79%)
Frame = -2
Query: 858 WTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDW 679
W ++ G+K IE D NKMK+YC IRVIAHTQMK++ R+KKAHI EIQ+NGGTV+ KVDW
Sbjct: 137 WQDEDGRKSIEADLNKMKKYCSKIRVIAHTQMKVMKHREKKAHIMEIQINGGTVAEKVDW 196
Query: 678 AREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGP 499
AREHLEKQV + +VF+ +EMIDCIG+TKGKGF+GVTSRWHTKKL RKTHKGLRKVACIG
Sbjct: 197 AREHLEKQVPVDSVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 256
Query: 498 WHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLT 319
WHP+RV F VARAGQKGYHHRTE+NKKIYR+G T++ K N TDYD+T
Sbjct: 257 WHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGKSCLTEEG---------KKNGGTDYDIT 307
Query: 318 VKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDT 139
K++ PMGGFPHYG VN DF+MI+GCC+G+KKR ITLRKSL K+ E+I LK+IDT
Sbjct: 308 EKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDT 367
Query: 138 SSKFGHGRFQTSDEKRTFMGPLKKDRLRQ 52
SSKFGHGRFQT EKR FMG LKKD + +
Sbjct: 368 SSKFGHGRFQTHAEKRAFMGKLKKDLIAE 396
>sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like
Length = 407
Score = 373 bits (958), Expect = e-103
Identities = 182/273 (66%), Positives = 214/273 (78%)
Frame = -2
Query: 858 WTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDW 679
W + GKK ++ DF MK+YCKVIRVI HTQMK+L RQKKAHI EIQLNGGTV+ KV W
Sbjct: 137 WRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAW 196
Query: 678 AREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGP 499
A+ LEKQV + +VFS +E+ID I +TKG+G +GVTSRWHTKKL RKTHKGLRKVACIG
Sbjct: 197 AQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGA 256
Query: 498 WHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLT 319
WHPARV ++ARAGQKGYHHRTE+NKKI+RIG G + D +K NAST YD+T
Sbjct: 257 WHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHME------DGKLVKNNASTSYDVT 310
Query: 318 VKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDT 139
K+ITP+GGFPHYGEVNNDF+M+KGC G KKR+ITLRKSL H ++ +E I LKFIDT
Sbjct: 311 AKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDT 370
Query: 138 SSKFGHGRFQTSDEKRTFMGPLKKDRLRQEAKE 40
+SKFGHGRFQT+ EKR FMGP KK L +E E
Sbjct: 371 TSKFGHGRFQTAQEKRAFMGPQKK-HLEKETPE 402
>sp|P50880|RL3_CAEEL 60S ribosomal protein L3
Length = 401
Score = 368 bits (945), Expect = e-101
Identities = 182/273 (66%), Positives = 214/273 (78%), Gaps = 1/273 (0%)
Frame = -2
Query: 858 WTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDW 679
W ++ GKKLIE DF K+K+YC IRVIAHTQMK+L +RQKKAH+ EIQ+NGGT+ KVDW
Sbjct: 137 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDW 196
Query: 678 AREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGP 499
AREHLEKQV + VF+ +EMID IG+T+G GF+GVTSRWHTKKL RKTHKGLRKVACIG
Sbjct: 197 AREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 256
Query: 498 WHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLT 319
WHP+RV+F VARAGQKG+HHRT IN KIYRIG T++ K N ST++DLT
Sbjct: 257 WHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG---------KNNGSTEFDLT 307
Query: 318 VKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDT 139
K ITPMGGFP YG VN D+IM++G +G KKRLITLRKSL T K+ E+I LK+IDT
Sbjct: 308 QKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDT 367
Query: 138 SSKFGHGRFQTSDEKRTFMGPLKKDRLRQ-EAK 43
SSK GHGRFQT+ EKR FMG LK+D L + EAK
Sbjct: 368 SSKTGHGRFQTTAEKRAFMGKLKRDFLAEAEAK 400
>sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3
Length = 401
Score = 367 bits (943), Expect = e-101
Identities = 178/269 (66%), Positives = 210/269 (78%)
Frame = -2
Query: 858 WTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDW 679
W ++ GKKLIE DF K+K+YC IRVIAHTQMK+L +RQKKAH+ EIQ+NGGT+ KVDW
Sbjct: 137 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQINGGTIEQKVDW 196
Query: 678 AREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGP 499
AREHLEKQ+ + VFS +EMID IG+TKG GF+GVTSRWHTKKL RKTHKGLRKVACIG
Sbjct: 197 AREHLEKQIQVDTVFSQDEMIDTIGVTKGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 256
Query: 498 WHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLT 319
WHP+RV+F VARAGQKG+HHRT IN KIYRIG T++ K N ST++DLT
Sbjct: 257 WHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG---------KNNGSTEFDLT 307
Query: 318 VKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDT 139
K I PMGGFP YG VN D++M++G +G KKRLITLRKSL T K+ E+I LK+IDT
Sbjct: 308 QKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAHEKINLKWIDT 367
Query: 138 SSKFGHGRFQTSDEKRTFMGPLKKDRLRQ 52
SSK GHGRFQT+ EKR FMG LK+D L +
Sbjct: 368 SSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
>sp|P35684|RL3_ORYSA 60S ribosomal protein L3
Length = 389
Score = 322 bits (824), Expect = 1e-87
Identities = 155/264 (58%), Positives = 198/264 (75%), Gaps = 1/264 (0%)
Frame = -2
Query: 858 WTEDRGKKLIELDFNKMKRYCKVIRVIAHTQM-KMLNQRQKKAHITEIQLNGGTVSNKVD 682
+ D GKK I++ KMK+Y ++RVIAHTQ+ KM +QKKAH+ EIQ+NGGT+++KVD
Sbjct: 137 YDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVD 196
Query: 681 WAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIG 502
+ + EK++ + VF +EMID IG+TKGKG+EGV +RW +L RKTH+GLRKVACIG
Sbjct: 197 YGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIG 256
Query: 501 PWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDL 322
WHPARVS+ VARAGQ GYHHRTE+NKK+Y+I G Q++ A A T++D
Sbjct: 257 AWHPARVSYTVARAGQNGYHHRTEMNKKVYKI--GKSGQESHA----------ACTEFDR 304
Query: 321 TVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFID 142
T K+ITPMGGFPHYG V D++MIKGCC+G KKR++TLR+SL + +EEI LKFID
Sbjct: 305 TEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFID 364
Query: 141 TSSKFGHGRFQTSDEKRTFMGPLK 70
TSSKFGHGRFQT+DEK+ F G LK
Sbjct: 365 TSSKFGHGRFQTTDEKQRFFGKLK 388
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,758,518
Number of Sequences: 369166
Number of extensions: 1837250
Number of successful extensions: 4594
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4536
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)