Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_H06
(926 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O16797|RL3_DROME 60S ribosomal protein L3 427 e-119
sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4) 426 e-119
sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA... 422 e-118
sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein) 422 e-118
sp|P49149|RL3_TOXCA 60S ribosomal protein L3 421 e-117
sp|P39872|RL3_BOVIN 60S ribosomal protein L3 419 e-117
sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3 403 e-112
sp|P50880|RL3_CAEEL 60S ribosomal protein L3 402 e-112
sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like 390 e-108
sp|P22738|RL3B_ARATH 60S ribosomal protein L3 365 e-100
>sp|O16797|RL3_DROME 60S ribosomal protein L3
Length = 416
Score = 427 bits (1097), Expect = e-119
Identities = 203/312 (65%), Positives = 239/312 (76%), Gaps = 7/312 (2%)
Frame = +1
Query: 1 SAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVRELNSQTNK 180
SAPRHGS+ F P +FP D S PVHLT F+ YKAG T +VRE + +K
Sbjct: 7 SAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSK 66
Query: 181 TNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKS 360
N KEV + VT+LETPPM++VG VGYIETP GLR VW +HLSEECRRRFYKNWYKS
Sbjct: 67 INK-KEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKS 125
Query: 361 KKKAFTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQL 540
KKKAFT++SKKWT+D GKK IE DF KM RYCKVIRVIAH+Q++++ QRQKKAH+ EIQL
Sbjct: 126 KKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQL 185
Query: 541 NGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTH 720
NGG++ +KV WAREHLEK + +SNVF +EMIDC+G+TKGKGF+GVTSRWHTKKL RKTH
Sbjct: 186 NGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTH 245
Query: 721 KGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQ-------QTEA 879
KGLRKVACIG WHP+RVS VARAGQKGYHHRTEINKKIYRIG G+ T+
Sbjct: 246 KGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNAST 305
Query: 880 QNDITKSRVMPV 915
+ D+T + P+
Sbjct: 306 EYDLTDKSITPM 317
>sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4)
Length = 403
Score = 426 bits (1095), Expect = e-119
Identities = 199/285 (69%), Positives = 238/285 (83%)
Frame = +1
Query: 1 SAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVRELNSQTNK 180
SAPRHGSLGFLP SFP D PS PVHLT+FL YKAG T +VRE++ +K
Sbjct: 7 SAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSK 66
Query: 181 TNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKS 360
N KEV + VTI+ETPPM++VG+VGY+ETPRGLRTFKTV+ EH+S+EC+RRFYKNW+KS
Sbjct: 67 VNK-KEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKS 125
Query: 361 KKKAFTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQL 540
KKKAFT+ KKW +D GKK +E DFN MK+YC+VIR+IAHTQM++L RQKKAH+ EIQ+
Sbjct: 126 KKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKAHLMEIQV 185
Query: 541 NGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTH 720
NGGTV+ K+DWARE LE+QV ++ VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH
Sbjct: 186 NGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTH 245
Query: 721 KGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLG 855
+GLRKVACIG WHPARV+F+VARAGQKGYHHRTEINKKIY+IG G
Sbjct: 246 RGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQG 290
>sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA binding protein B)
(TARBP-B)
Length = 403
Score = 422 bits (1086), Expect = e-118
Identities = 198/285 (69%), Positives = 238/285 (83%)
Frame = +1
Query: 1 SAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVRELNSQTNK 180
SAPRHGSLGFLP SFP D PS PVHLT+FL YKAG T +VRE++ +K
Sbjct: 7 SAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSK 66
Query: 181 TNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKS 360
N KEV + VTI+ETPPM++VG+VGY+ETPRGLRTFKTV+ EH+S+EC+RRFYKNW+KS
Sbjct: 67 VNK-KEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKS 125
Query: 361 KKKAFTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQL 540
KKKAFT+ KKW ++ GKK +E DF+ MK+YC+VIRVIAHTQM++L RQKKAH+ EIQ+
Sbjct: 126 KKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQV 185
Query: 541 NGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTH 720
NGGTV+ K+DWARE LE+QV ++ VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH
Sbjct: 186 NGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTH 245
Query: 721 KGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLG 855
+GLRKVACIG WHPARV+F+VARAGQKGYHHRTEINKKIY+IG G
Sbjct: 246 RGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQG 290
>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein)
Length = 403
Score = 422 bits (1086), Expect = e-118
Identities = 198/285 (69%), Positives = 236/285 (82%)
Frame = +1
Query: 1 SAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVRELNSQTNK 180
SAPRHGSLGFLP SFP D S PVHLT+FL YKAG T +VRE++ +K
Sbjct: 7 SAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVDRPGSK 66
Query: 181 TNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKS 360
N KEV + VTI+ETPPM++VG+VGY+ETPRGLRTFKTV+ EH+S+EC+RRFYKNW+KS
Sbjct: 67 VNK-KEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKS 125
Query: 361 KKKAFTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQL 540
KKKAFT+ KKW +D GKK +E DFN MK+YC+VIR+IAHTQM++L RQKKAH+ EIQ+
Sbjct: 126 KKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKAHLMEIQV 185
Query: 541 NGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTH 720
NGGTV+ K+DWARE LE+QV ++ VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH
Sbjct: 186 NGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTH 245
Query: 721 KGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLG 855
+GLRKVACIG WHPARV+F VARAGQKGYHHRTEINKKIY+IG G
Sbjct: 246 RGLRKVACIGAWHPARVAFTVARAGQKGYHHRTEINKKIYKIGQG 290
>sp|P49149|RL3_TOXCA 60S ribosomal protein L3
Length = 402
Score = 421 bits (1083), Expect = e-117
Identities = 198/309 (64%), Positives = 241/309 (77%), Gaps = 4/309 (1%)
Frame = +1
Query: 1 SAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVRELNSQTNK 180
SAPRHGS+GF P +FP D P+ P+HLT+F+++KAG T +VRE++ +K
Sbjct: 7 SAPRHGSMGFTPKKRSKRHRGKVKAFPKDDPTKPIHLTAFIAFKAGMTHIVREVDKPGSK 66
Query: 181 TNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKS 360
N KEV + VTI E PPM+IVG+VGYI+TPRG R FKTVW EHLSE+CR RFYKNW+ S
Sbjct: 67 VNK-KEVVEAVTIFEAPPMVIVGIVGYIDTPRGPRQFKTVWAEHLSEDCRGRFYKNWHTS 125
Query: 361 KKKAFTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQL 540
KKKAF + +KKW ++ G+K IE D NKMK+YC IRVIAHTQMK++ R+KKAHI EIQ+
Sbjct: 126 KKKAFQKHAKKWQDEDGRKSIEADLNKMKKYCSKIRVIAHTQMKVMKHREKKAHIMEIQI 185
Query: 541 NGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTH 720
NGGTV+ KVDWAREHLEKQV + +VF+ +EMIDCIG+TKGKGF+GVTSRWHTKKL RKTH
Sbjct: 186 NGGTVAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTH 245
Query: 721 KGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQN----D 888
KGLRKVACIG WHP+RV F VARAGQKGYHHRTE+NKKIYR+G T++ + D
Sbjct: 246 KGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGKSCLTEEGKKNGGTDYD 305
Query: 889 ITKSRVMPV 915
IT+ V P+
Sbjct: 306 ITEKSVNPM 314
>sp|P39872|RL3_BOVIN 60S ribosomal protein L3
Length = 403
Score = 419 bits (1076), Expect = e-117
Identities = 197/285 (69%), Positives = 236/285 (82%)
Frame = +1
Query: 1 SAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVRELNSQTNK 180
SAPRHGSLGFLP SFP D S PVHLT+FL YKAG T +VRE++ +K
Sbjct: 7 SAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVDRPGSK 66
Query: 181 TNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKS 360
N KEV + VTI+ETPPM+IVG+VGY+ETPRGLRTFKT++ EH+S+EC+RRFYKNW+KS
Sbjct: 67 VNK-KEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKS 125
Query: 361 KKKAFTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQL 540
KKKAFT+ KKW + GKK +E DF+ MK+YC+VIRVIAHTQM++L RQKKAH+ E+Q+
Sbjct: 126 KKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEVQV 185
Query: 541 NGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTH 720
NGGTV+ K+DWARE LE+QV +S VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH
Sbjct: 186 NGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTH 245
Query: 721 KGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLG 855
+GLRKVACIG WHPARV+F+VARAGQKGYHHRTEINKKIY+IG G
Sbjct: 246 RGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQG 290
>sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3
Length = 401
Score = 403 bits (1036), Expect = e-112
Identities = 191/309 (61%), Positives = 234/309 (75%), Gaps = 4/309 (1%)
Frame = +1
Query: 1 SAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVRELNSQTNK 180
SAPRHG +GF P +FP D S P+HLT+FL YKAG T +VR+++ +K
Sbjct: 7 SAPRHGHMGFTPKKRSRTYRGRIKAFPKDDASKPIHLTAFLGYKAGMTHIVRDVDKPGSK 66
Query: 181 TNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKS 360
N KEV + V+I+ETPPM+I GV GYI+TP+G R T+W EHLSEE RRRFY NW KS
Sbjct: 67 VNK-KEVVEAVSIIETPPMVIAGVTGYIDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125
Query: 361 KKKAFTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQL 540
KKKAFT+ +KKW ++ GKKLIE DF K+K+YC IRVIAHTQMK+L +RQKKAH+ EIQ+
Sbjct: 126 KKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQI 185
Query: 541 NGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTH 720
NGGT+ KVDWAREHLEKQ+ + VFS +EMID IG+TKG GF+GVTSRWHTKKL RKTH
Sbjct: 186 NGGTIEQKVDWAREHLEKQIQVDTVFSQDEMIDTIGVTKGHGFKGVTSRWHTKKLPRKTH 245
Query: 721 KGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTE----AQND 888
KGLRKVACIG WHP+RV+F VARAGQKG+HHRT IN KIYRIG T++ + + D
Sbjct: 246 KGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNNGSTEFD 305
Query: 889 ITKSRVMPV 915
+T+ + P+
Sbjct: 306 LTQKTINPM 314
>sp|P50880|RL3_CAEEL 60S ribosomal protein L3
Length = 401
Score = 402 bits (1033), Expect = e-112
Identities = 190/309 (61%), Positives = 234/309 (75%), Gaps = 4/309 (1%)
Frame = +1
Query: 1 SAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVRELNSQTNK 180
SAPRHG +GF P +FP D S P+HLT+FL YKAG T +VR+++ +K
Sbjct: 7 SAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGSK 66
Query: 181 TNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKS 360
N KEV + VTI+ETPPM+I GV GY++TP+G R T+W EHLSEE RRRFY NW KS
Sbjct: 67 VNK-KEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125
Query: 361 KKKAFTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQL 540
KKKAFT+ +KKW ++ GKKLIE DF K+K+YC IRVIAHTQMK+L +RQKKAH+ EIQ+
Sbjct: 126 KKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQV 185
Query: 541 NGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTH 720
NGGT+ KVDWAREHLEKQV + VF+ +EMID IG+T+G GF+GVTSRWHTKKL RKTH
Sbjct: 186 NGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTH 245
Query: 721 KGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTE----AQND 888
KGLRKVACIG WHP+RV+F VARAGQKG+HHRT IN KIYRIG T++ + + D
Sbjct: 246 KGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNNGSTEFD 305
Query: 889 ITKSRVMPV 915
+T+ + P+
Sbjct: 306 LTQKTITPM 314
>sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like
Length = 407
Score = 390 bits (1002), Expect = e-108
Identities = 186/285 (65%), Positives = 227/285 (79%)
Frame = +1
Query: 1 SAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVRELNSQTNK 180
SAPRHG LGFLP ++P D PS PVHLT+FL YKAG T +RE++ K
Sbjct: 7 SAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLK 66
Query: 181 TNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKS 360
+ +EV + VTI+ETPP+++VGVVGY+ TPRGLR+FKT++ EHLS+ECRRRFYK+W+KS
Sbjct: 67 ISKREEV-EAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKS 125
Query: 361 KKKAFTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQL 540
KKKAFT++ K+W + GKK ++ DF MK+YCKVIRVI HTQMK+L RQKKAHI EIQL
Sbjct: 126 KKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIMEIQL 185
Query: 541 NGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTH 720
NGGTV+ KV WA+ LEKQV + +VFS +E+ID I +TKG+G +GVTSRWHTKKL RKTH
Sbjct: 186 NGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTH 245
Query: 721 KGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLG 855
KGLRKVACIG WHPARV ++ARAGQKGYHHRTE+NKKI+RIG G
Sbjct: 246 KGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRG 290
>sp|P22738|RL3B_ARATH 60S ribosomal protein L3
Length = 390
Score = 365 bits (937), Expect = e-100
Identities = 178/305 (58%), Positives = 222/305 (72%), Gaps = 2/305 (0%)
Frame = +1
Query: 7 PRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVRELNSQTNKTN 186
PRHGSLGFLP +FP D P+ P LTSFL YKAG T +VR++ +K +
Sbjct: 9 PRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPGSKLH 68
Query: 187 NGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKSKK 366
KE + VTI+ETPPM++VGVVGY++TPRGLR+ TVW +HLSEE RRRFYKNW KSKK
Sbjct: 69 K-KETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKNWAKSKK 127
Query: 367 KAFTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQM-KMLNQRQKKAHITEIQLN 543
KAFTR SKK + GKK I+ KMK+YC VIRV+AHTQ+ KM +QKKAH+ EIQ+N
Sbjct: 128 KAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNEIQIN 187
Query: 544 GGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHK 723
GG ++ KVD+A EKQV + +F +EMID IG+TKGKG+EGV +RW +L RKTH+
Sbjct: 188 GGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR 247
Query: 724 GLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIG-LGVKTQQTEAQNDITKS 900
GLRKVACIG WHPARVS+ VARAGQ GYHHRTE+NKK+YR+G +G +T + D T+
Sbjct: 248 GLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVGQETHSAMTEYDRTEK 307
Query: 901 RVMPV 915
+ P+
Sbjct: 308 DITPM 312
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,604,061
Number of Sequences: 369166
Number of extensions: 1964514
Number of successful extensions: 5627
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5554
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9510757740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)