Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_O19
(824 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O16797|RL3_DROME 60S ribosomal protein L3 401 e-111
sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4) 379 e-105
sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein) 378 e-105
sp|P39872|RL3_BOVIN 60S ribosomal protein L3 377 e-104
sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA... 377 e-104
sp|P49149|RL3_TOXCA 60S ribosomal protein L3 374 e-103
sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like 363 e-100
sp|P50880|RL3_CAEEL 60S ribosomal protein L3 353 4e-97
sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3 352 7e-97
sp|P14126|RL3_YEAST 60S ribosomal protein L3 (YL1) (RP1) (T... 318 1e-86
>sp|O16797|RL3_DROME 60S ribosomal protein L3
Length = 416
Score = 401 bits (1031), Expect = e-111
Identities = 191/264 (72%), Positives = 221/264 (83%)
Frame = +1
Query: 4 DFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSIS 183
DF KM RYCKVIRVIAH+Q++++ QRQKKAH+ EIQLNGG++ +KV WAREHLEK + +S
Sbjct: 149 DFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVS 208
Query: 184 NVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVAR 363
NVF +EMIDC+G+TKGKGF+GVTSRWHTKKL RKTHKGLRKVACIG WHP+RVS VAR
Sbjct: 209 NVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVAR 268
Query: 364 AGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPH 543
AGQKGYHHRTEINKKIYRIG G+ T+ D IK NAST+YDLT K+ITPMGGFPH
Sbjct: 269 AGQKGYHHRTEINKKIYRIGAGIHTK------DGKVIKNNASTEYDLTDKSITPMGGFPH 322
Query: 544 YGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTS 723
YGEVNNDF+MIKGCC+G+KKR+ITLRKSL K+ +E+I LKFIDTSSK GHGRFQT
Sbjct: 323 YGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTP 382
Query: 724 DEKRTFMGPLKKDRLRQEAKEIAA 795
+K FMGPLKKDRL++EA A
Sbjct: 383 ADKLAFMGPLKKDRLKEEAAATTA 406
>sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4)
Length = 403
Score = 379 bits (972), Expect = e-105
Identities = 180/258 (69%), Positives = 216/258 (83%)
Frame = +1
Query: 4 DFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSIS 183
DFN MK+YC+VIR+IAHTQM++L RQKKAH+ EIQ+NGGTV+ K+DWARE LE+QV ++
Sbjct: 149 DFNSMKKYCQVIRIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVN 208
Query: 184 NVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVAR 363
VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH+GLRKVACIG WHPARV+F+VAR
Sbjct: 209 QVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVAR 268
Query: 364 AGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPH 543
AGQKGYHHRTEINKKIY+IG G + D IK NASTDYDL+ K+I P+GGF H
Sbjct: 269 AGQKGYHHRTEINKKIYKIGQGYLIK------DGKLIKNNASTDYDLSDKSINPLGGFVH 322
Query: 544 YGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTS 723
YGEV NDFIM+KGC +G KKR++TLRKSL K+R +E+I LKFIDT+SKFGHGRFQT
Sbjct: 323 YGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTM 382
Query: 724 DEKRTFMGPLKKDRLRQE 777
+EK+ FMGPLKKDR+ +E
Sbjct: 383 EEKKAFMGPLKKDRIAKE 400
>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein)
Length = 403
Score = 378 bits (971), Expect = e-105
Identities = 180/258 (69%), Positives = 215/258 (83%)
Frame = +1
Query: 4 DFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSIS 183
DFN MK+YC+VIR+IAHTQM++L RQKKAH+ EIQ+NGGTV+ K+DWARE LE+QV ++
Sbjct: 149 DFNSMKKYCQVIRIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVN 208
Query: 184 NVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVAR 363
VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH+GLRKVACIG WHPARV+F VAR
Sbjct: 209 QVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFTVAR 268
Query: 364 AGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPH 543
AGQKGYHHRTEINKKIY+IG G + D IK NASTDYDL+ K+I P+GGF H
Sbjct: 269 AGQKGYHHRTEINKKIYKIGQGYLIK------DGKLIKNNASTDYDLSDKSINPLGGFVH 322
Query: 544 YGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTS 723
YGEV NDFIM+KGC +G KKR++TLRKSL K+R +E+I LKFIDT+SKFGHGRFQT
Sbjct: 323 YGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTM 382
Query: 724 DEKRTFMGPLKKDRLRQE 777
+EK+ FMGPLKKDR+ +E
Sbjct: 383 EEKKAFMGPLKKDRIAKE 400
>sp|P39872|RL3_BOVIN 60S ribosomal protein L3
Length = 403
Score = 377 bits (968), Expect = e-104
Identities = 179/258 (69%), Positives = 216/258 (83%)
Frame = +1
Query: 4 DFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSIS 183
DF+ MK+YC+VIRVIAHTQM++L RQKKAH+ E+Q+NGGTV+ K+DWARE LE+QV +S
Sbjct: 149 DFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVS 208
Query: 184 NVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVAR 363
VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH+GLRKVACIG WHPARV+F+VAR
Sbjct: 209 QVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVAR 268
Query: 364 AGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPH 543
AGQKGYHHRTEINKKIY+IG G + D IK NASTDYDL+ K+I P+GGF H
Sbjct: 269 AGQKGYHHRTEINKKIYKIGQGYLIK------DGKLIKNNASTDYDLSDKSINPLGGFVH 322
Query: 544 YGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTS 723
YGEV NDF+M+KGC +G KKR++TLRKSL K+R +E+I LKFIDT+SKFGHGRFQT
Sbjct: 323 YGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTV 382
Query: 724 DEKRTFMGPLKKDRLRQE 777
+EK+ FMGPLKKDR+ +E
Sbjct: 383 EEKKAFMGPLKKDRIAKE 400
>sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA binding protein B)
(TARBP-B)
Length = 403
Score = 377 bits (967), Expect = e-104
Identities = 179/258 (69%), Positives = 216/258 (83%)
Frame = +1
Query: 4 DFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSIS 183
DF+ MK+YC+VIRVIAHTQM++L RQKKAH+ EIQ+NGGTV+ K+DWARE LE+QV ++
Sbjct: 149 DFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVN 208
Query: 184 NVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVAR 363
VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH+GLRKVACIG WHPARV+F+VAR
Sbjct: 209 QVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVAR 268
Query: 364 AGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPH 543
AGQKGYHHRTEINKKIY+IG G + D IK NASTDYDL+ K+I P+GGF H
Sbjct: 269 AGQKGYHHRTEINKKIYKIGQGYLIK------DGKLIKNNASTDYDLSDKSINPLGGFVH 322
Query: 544 YGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTS 723
YGEV NDF+M+KGC +G KKR++TLRKSL K+R +E+I LKFIDT+SKFGHGRFQT
Sbjct: 323 YGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTM 382
Query: 724 DEKRTFMGPLKKDRLRQE 777
+EK+ FMGPLKKDR+ +E
Sbjct: 383 EEKKAFMGPLKKDRIAKE 400
>sp|P49149|RL3_TOXCA 60S ribosomal protein L3
Length = 402
Score = 374 bits (960), Expect = e-103
Identities = 178/257 (69%), Positives = 207/257 (80%)
Frame = +1
Query: 4 DFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSIS 183
D NKMK+YC IRVIAHTQMK++ R+KKAHI EIQ+NGGTV+ KVDWAREHLEKQV +
Sbjct: 149 DLNKMKKYCSKIRVIAHTQMKVMKHREKKAHIMEIQINGGTVAEKVDWAREHLEKQVPVD 208
Query: 184 NVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVAR 363
+VF+ +EMIDCIG+TKGKGF+GVTSRWHTKKL RKTHKGLRKVACIG WHP+RV F VAR
Sbjct: 209 SVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVAR 268
Query: 364 AGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPH 543
AGQKGYHHRTE+NKKIYR+G T++ K N TDYD+T K++ PMGGFPH
Sbjct: 269 AGQKGYHHRTEVNKKIYRLGKSCLTEEG---------KKNGGTDYDITEKSVNPMGGFPH 319
Query: 544 YGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTS 723
YG VN DF+MI+GCC+G+KKR ITLRKSL K+ E+I LK+IDTSSKFGHGRFQT
Sbjct: 320 YGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTH 379
Query: 724 DEKRTFMGPLKKDRLRQ 774
EKR FMG LKKD + +
Sbjct: 380 AEKRAFMGKLKKDLIAE 396
>sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like
Length = 407
Score = 363 bits (933), Expect = e-100
Identities = 178/261 (68%), Positives = 207/261 (79%)
Frame = +1
Query: 4 DFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSIS 183
DF MK+YCKVIRVI HTQMK+L RQKKAHI EIQLNGGTV+ KV WA+ LEKQV +
Sbjct: 149 DFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVH 208
Query: 184 NVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVAR 363
+VFS +E+ID I +TKG+G +GVTSRWHTKKL RKTHKGLRKVACIG WHPARV ++AR
Sbjct: 209 SVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIAR 268
Query: 364 AGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPH 543
AGQKGYHHRTE+NKKI+RIG G + D +K NAST YD+T K+ITP+GGFPH
Sbjct: 269 AGQKGYHHRTELNKKIFRIGRGPHME------DGKLVKNNASTSYDVTAKSITPLGGFPH 322
Query: 544 YGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTS 723
YGEVNNDF+M+KGC G KKR+ITLRKSL H ++ +E I LKFIDT+SKFGHGRFQT+
Sbjct: 323 YGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTA 382
Query: 724 DEKRTFMGPLKKDRLRQEAKE 786
EKR FMGP KK L +E E
Sbjct: 383 QEKRAFMGPQKK-HLEKETPE 402
>sp|P50880|RL3_CAEEL 60S ribosomal protein L3
Length = 401
Score = 353 bits (905), Expect = 4e-97
Identities = 175/261 (67%), Positives = 205/261 (78%), Gaps = 1/261 (0%)
Frame = +1
Query: 4 DFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSIS 183
DF K+K+YC IRVIAHTQMK+L +RQKKAH+ EIQ+NGGT+ KVDWAREHLEKQV +
Sbjct: 149 DFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVD 208
Query: 184 NVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVAR 363
VF+ +EMID IG+T+G GF+GVTSRWHTKKL RKTHKGLRKVACIG WHP+RV+F VAR
Sbjct: 209 TVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVAR 268
Query: 364 AGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPH 543
AGQKG+HHRT IN KIYRIG T++ K N ST++DLT K ITPMGGFP
Sbjct: 269 AGQKGFHHRTIINNKIYRIGKSALTEEG---------KNNGSTEFDLTQKTITPMGGFPR 319
Query: 544 YGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTS 723
YG VN D+IM++G +G KKRLITLRKSL T K+ E+I LK+IDTSSK GHGRFQT+
Sbjct: 320 YGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTT 379
Query: 724 DEKRTFMGPLKKDRLRQ-EAK 783
EKR FMG LK+D L + EAK
Sbjct: 380 AEKRAFMGKLKRDFLAEAEAK 400
>sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3
Length = 401
Score = 352 bits (903), Expect = 7e-97
Identities = 171/257 (66%), Positives = 201/257 (78%)
Frame = +1
Query: 4 DFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSIS 183
DF K+K+YC IRVIAHTQMK+L +RQKKAH+ EIQ+NGGT+ KVDWAREHLEKQ+ +
Sbjct: 149 DFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQINGGTIEQKVDWAREHLEKQIQVD 208
Query: 184 NVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVAR 363
VFS +EMID IG+TKG GF+GVTSRWHTKKL RKTHKGLRKVACIG WHP+RV+F VAR
Sbjct: 209 TVFSQDEMIDTIGVTKGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVAR 268
Query: 364 AGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPH 543
AGQKG+HHRT IN KIYRIG T++ K N ST++DLT K I PMGGFP
Sbjct: 269 AGQKGFHHRTIINNKIYRIGKSALTEEG---------KNNGSTEFDLTQKTINPMGGFPR 319
Query: 544 YGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTS 723
YG VN D++M++G +G KKRLITLRKSL T K+ E+I LK+IDTSSK GHGRFQT+
Sbjct: 320 YGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTT 379
Query: 724 DEKRTFMGPLKKDRLRQ 774
EKR FMG LK+D L +
Sbjct: 380 AEKRAFMGKLKRDFLAE 396
>sp|P14126|RL3_YEAST 60S ribosomal protein L3 (YL1) (RP1) (Trichodermin resistance
protein)
Length = 387
Score = 318 bits (815), Expect = 1e-86
Identities = 151/250 (60%), Positives = 185/250 (74%)
Frame = +1
Query: 13 KMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVF 192
++K+Y V+RV+ HTQ++ QKKAH+ EIQLNGG++S KVDWAREH EK V++ +VF
Sbjct: 150 RIKKYASVVRVLVHTQIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVF 209
Query: 193 SPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQ 372
NEMID I +TKG GFEGVT RW TKKL RKTH+GLRKVACIG WHPA V ++VARAGQ
Sbjct: 210 EQNEMIDAIAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQ 269
Query: 373 KGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGE 552
+GYH RT IN KIYR+G G + N +T +D T K ITPMGGF HYGE
Sbjct: 270 RGYHSRTSINHKIYRVGKG-------------DDEANGATSFDRTKKTITPMGGFVHYGE 316
Query: 553 VNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEK 732
+ NDFIM+KGC G +KR++TLRKSL+T ++ +EE+ LK+IDT+SKFG GRFQT EK
Sbjct: 317 IKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEK 376
Query: 733 RTFMGPLKKD 762
FMG LKKD
Sbjct: 377 HAFMGTLKKD 386
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,476,255
Number of Sequences: 369166
Number of extensions: 1755005
Number of successful extensions: 4359
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4301
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7956112725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)