Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_006_F11 (844 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|O16797|RL3_DROME 60S ribosomal protein L3 405 e-113 sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4) 382 e-106 sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein) 382 e-106 sp|P39872|RL3_BOVIN 60S ribosomal protein L3 380 e-105 sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA... 380 e-105 sp|P49149|RL3_TOXCA 60S ribosomal protein L3 378 e-104 sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like 366 e-101 sp|P50880|RL3_CAEEL 60S ribosomal protein L3 360 4e-99 sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3 359 6e-99 sp|P14126|RL3_YEAST 60S ribosomal protein L3 (YL1) (RP1) (T... 321 2e-87
>sp|O16797|RL3_DROME 60S ribosomal protein L3 Length = 416 Score = 405 bits (1041), Expect = e-113 Identities = 194/270 (71%), Positives = 225/270 (83%) Frame = +2 Query: 5 EKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLE 184 +K IE DF KM RYCKVIRVIAH+Q++++ QRQKKAH+ EIQLNGG++ +KV WAREHLE Sbjct: 143 KKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLE 202 Query: 185 KQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARV 364 K + +SNVF +EMIDC+G+TKGKGF+GVTSRWHTKKL RKTHKGLRKVACIG WHP+RV Sbjct: 203 KPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV 262 Query: 365 SFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITP 544 S VARAGQKGYHHRTEINKKIYRIG G+ T+ D IK NAST+YDLT K+ITP Sbjct: 263 STTVARAGQKGYHHRTEINKKIYRIGAGIHTK------DGKVIKNNASTEYDLTDKSITP 316 Query: 545 MGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGH 724 MGGFPHYGEVNNDF+MIKGCC+G+KKR+ITLRKSL K+ +E+I LKFIDTSSK GH Sbjct: 317 MGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGH 376 Query: 725 GRFQTSDEKRTFMGPLKKDRLRQEAKEIAA 814 GRFQT +K FMGPLKKDRL++EA A Sbjct: 377 GRFQTPADKLAFMGPLKKDRLKEEAAATTA 406
>sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4) Length = 403 Score = 382 bits (981), Expect = e-106 Identities = 182/264 (68%), Positives = 220/264 (83%) Frame = +2 Query: 5 EKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLE 184 +K +E DFN MK+YC+VIR+IAHTQM++L RQKKAH+ EIQ+NGGTV+ K+DWARE LE Sbjct: 143 KKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202 Query: 185 KQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARV 364 +QV ++ VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH+GLRKVACIG WHPARV Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARV 262 Query: 365 SFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITP 544 +F+VARAGQKGYHHRTEINKKIY+IG G + D IK NASTDYDL+ K+I P Sbjct: 263 AFSVARAGQKGYHHRTEINKKIYKIGQGYLIK------DGKLIKNNASTDYDLSDKSINP 316 Query: 545 MGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGH 724 +GGF HYGEV NDFIM+KGC +G KKR++TLRKSL K+R +E+I LKFIDT+SKFGH Sbjct: 317 LGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGH 376 Query: 725 GRFQTSDEKRTFMGPLKKDRLRQE 796 GRFQT +EK+ FMGPLKKDR+ +E Sbjct: 377 GRFQTMEEKKAFMGPLKKDRIAKE 400
>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein) Length = 403 Score = 382 bits (980), Expect = e-106 Identities = 182/264 (68%), Positives = 219/264 (82%) Frame = +2 Query: 5 EKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLE 184 +K +E DFN MK+YC+VIR+IAHTQM++L RQKKAH+ EIQ+NGGTV+ K+DWARE LE Sbjct: 143 KKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202 Query: 185 KQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARV 364 +QV ++ VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH+GLRKVACIG WHPARV Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARV 262 Query: 365 SFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITP 544 +F VARAGQKGYHHRTEINKKIY+IG G + D IK NASTDYDL+ K+I P Sbjct: 263 AFTVARAGQKGYHHRTEINKKIYKIGQGYLIK------DGKLIKNNASTDYDLSDKSINP 316 Query: 545 MGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGH 724 +GGF HYGEV NDFIM+KGC +G KKR++TLRKSL K+R +E+I LKFIDT+SKFGH Sbjct: 317 LGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGH 376 Query: 725 GRFQTSDEKRTFMGPLKKDRLRQE 796 GRFQT +EK+ FMGPLKKDR+ +E Sbjct: 377 GRFQTMEEKKAFMGPLKKDRIAKE 400
>sp|P39872|RL3_BOVIN 60S ribosomal protein L3 Length = 403 Score = 380 bits (977), Expect = e-105 Identities = 181/264 (68%), Positives = 220/264 (83%) Frame = +2 Query: 5 EKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLE 184 +K +E DF+ MK+YC+VIRVIAHTQM++L RQKKAH+ E+Q+NGGTV+ K+DWARE LE Sbjct: 143 KKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLE 202 Query: 185 KQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARV 364 +QV +S VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH+GLRKVACIG WHPARV Sbjct: 203 QQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARV 262 Query: 365 SFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITP 544 +F+VARAGQKGYHHRTEINKKIY+IG G + D IK NASTDYDL+ K+I P Sbjct: 263 AFSVARAGQKGYHHRTEINKKIYKIGQGYLIK------DGKLIKNNASTDYDLSDKSINP 316 Query: 545 MGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGH 724 +GGF HYGEV NDF+M+KGC +G KKR++TLRKSL K+R +E+I LKFIDT+SKFGH Sbjct: 317 LGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGH 376 Query: 725 GRFQTSDEKRTFMGPLKKDRLRQE 796 GRFQT +EK+ FMGPLKKDR+ +E Sbjct: 377 GRFQTVEEKKAFMGPLKKDRIAKE 400
>sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA binding protein B) (TARBP-B) Length = 403 Score = 380 bits (976), Expect = e-105 Identities = 181/264 (68%), Positives = 220/264 (83%) Frame = +2 Query: 5 EKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLE 184 +K +E DF+ MK+YC+VIRVIAHTQM++L RQKKAH+ EIQ+NGGTV+ K+DWARE LE Sbjct: 143 KKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLE 202 Query: 185 KQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARV 364 +QV ++ VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH+GLRKVACIG WHPARV Sbjct: 203 QQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARV 262 Query: 365 SFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITP 544 +F+VARAGQKGYHHRTEINKKIY+IG G + D IK NASTDYDL+ K+I P Sbjct: 263 AFSVARAGQKGYHHRTEINKKIYKIGQGYLIK------DGKLIKNNASTDYDLSDKSINP 316 Query: 545 MGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGH 724 +GGF HYGEV NDF+M+KGC +G KKR++TLRKSL K+R +E+I LKFIDT+SKFGH Sbjct: 317 LGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGH 376 Query: 725 GRFQTSDEKRTFMGPLKKDRLRQE 796 GRFQT +EK+ FMGPLKKDR+ +E Sbjct: 377 GRFQTMEEKKAFMGPLKKDRIAKE 400
>sp|P49149|RL3_TOXCA 60S ribosomal protein L3 Length = 402 Score = 378 bits (971), Expect = e-104 Identities = 181/262 (69%), Positives = 210/262 (80%) Frame = +2 Query: 8 KLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEK 187 K IE D NKMK+YC IRVIAHTQMK++ R+KKAHI EIQ+NGGTV+ KVDWAREHLEK Sbjct: 144 KSIEADLNKMKKYCSKIRVIAHTQMKVMKHREKKAHIMEIQINGGTVAEKVDWAREHLEK 203 Query: 188 QVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVS 367 QV + +VF+ +EMIDCIG+TKGKGF+GVTSRWHTKKL RKTHKGLRKVACIG WHP+RV Sbjct: 204 QVPVDSVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQ 263 Query: 368 FAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPM 547 F VARAGQKGYHHRTE+NKKIYR+G T++ K N TDYD+T K++ PM Sbjct: 264 FTVARAGQKGYHHRTEVNKKIYRLGKSCLTEEG---------KKNGGTDYDITEKSVNPM 314 Query: 548 GGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHG 727 GGFPHYG VN DF+MI+GCC+G+KKR ITLRKSL K+ E+I LK+IDTSSKFGHG Sbjct: 315 GGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHG 374 Query: 728 RFQTSDEKRTFMGPLKKDRLRQ 793 RFQT EKR FMG LKKD + + Sbjct: 375 RFQTHAEKRAFMGKLKKDLIAE 396
>sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like Length = 407 Score = 366 bits (939), Expect = e-101 Identities = 179/267 (67%), Positives = 211/267 (79%) Frame = +2 Query: 5 EKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLE 184 +K ++ DF MK+YCKVIRVI HTQMK+L RQKKAHI EIQLNGGTV+ KV WA+ LE Sbjct: 143 KKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLE 202 Query: 185 KQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARV 364 KQV + +VFS +E+ID I +TKG+G +GVTSRWHTKKL RKTHKGLRKVACIG WHPARV Sbjct: 203 KQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARV 262 Query: 365 SFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITP 544 ++ARAGQKGYHHRTE+NKKI+RIG G + D +K NAST YD+T K+ITP Sbjct: 263 GCSIARAGQKGYHHRTELNKKIFRIGRGPHME------DGKLVKNNASTSYDVTAKSITP 316 Query: 545 MGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGH 724 +GGFPHYGEVNNDF+M+KGC G KKR+ITLRKSL H ++ +E I LKFIDT+SKFGH Sbjct: 317 LGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGH 376 Query: 725 GRFQTSDEKRTFMGPLKKDRLRQEAKE 805 GRFQT+ EKR FMGP KK L +E E Sbjct: 377 GRFQTAQEKRAFMGPQKK-HLEKETPE 402
>sp|P50880|RL3_CAEEL 60S ribosomal protein L3 Length = 401 Score = 360 bits (923), Expect = 4e-99 Identities = 179/267 (67%), Positives = 210/267 (78%), Gaps = 1/267 (0%) Frame = +2 Query: 5 EKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLE 184 +KLIE DF K+K+YC IRVIAHTQMK+L +RQKKAH+ EIQ+NGGT+ KVDWAREHLE Sbjct: 143 KKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLE 202 Query: 185 KQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARV 364 KQV + VF+ +EMID IG+T+G GF+GVTSRWHTKKL RKTHKGLRKVACIG WHP+RV Sbjct: 203 KQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV 262 Query: 365 SFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITP 544 +F VARAGQKG+HHRT IN KIYRIG T++ K N ST++DLT K ITP Sbjct: 263 AFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG---------KNNGSTEFDLTQKTITP 313 Query: 545 MGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGH 724 MGGFP YG VN D+IM++G +G KKRLITLRKSL T K+ E+I LK+IDTSSK GH Sbjct: 314 MGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGH 373 Query: 725 GRFQTSDEKRTFMGPLKKDRLRQ-EAK 802 GRFQT+ EKR FMG LK+D L + EAK Sbjct: 374 GRFQTTAEKRAFMGKLKRDFLAEAEAK 400
>sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3 Length = 401 Score = 359 bits (921), Expect = 6e-99 Identities = 175/263 (66%), Positives = 206/263 (78%) Frame = +2 Query: 5 EKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLE 184 +KLIE DF K+K+YC IRVIAHTQMK+L +RQKKAH+ EIQ+NGGT+ KVDWAREHLE Sbjct: 143 KKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQINGGTIEQKVDWAREHLE 202 Query: 185 KQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARV 364 KQ+ + VFS +EMID IG+TKG GF+GVTSRWHTKKL RKTHKGLRKVACIG WHP+RV Sbjct: 203 KQIQVDTVFSQDEMIDTIGVTKGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRV 262 Query: 365 SFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITP 544 +F VARAGQKG+HHRT IN KIYRIG T++ K N ST++DLT K I P Sbjct: 263 AFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG---------KNNGSTEFDLTQKTINP 313 Query: 545 MGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGH 724 MGGFP YG VN D++M++G +G KKRLITLRKSL T K+ E+I LK+IDTSSK GH Sbjct: 314 MGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGH 373 Query: 725 GRFQTSDEKRTFMGPLKKDRLRQ 793 GRFQT+ EKR FMG LK+D L + Sbjct: 374 GRFQTTAEKRAFMGKLKRDFLAE 396
>sp|P14126|RL3_YEAST 60S ribosomal protein L3 (YL1) (RP1) (Trichodermin resistance protein) Length = 387 Score = 321 bits (822), Expect = 2e-87 Identities = 153/256 (59%), Positives = 188/256 (73%) Frame = +2 Query: 14 IELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQV 193 IE + ++K+Y V+RV+ HTQ++ QKKAH+ EIQLNGG++S KVDWAREH EK V Sbjct: 144 IERELARIKKYASVVRVLVHTQIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTV 203 Query: 194 SISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFA 373 ++ +VF NEMID I +TKG GFEGVT RW TKKL RKTH+GLRKVACIG WHPA V ++ Sbjct: 204 AVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWS 263 Query: 374 VARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGG 553 VARAGQ+GYH RT IN KIYR+G G + N +T +D T K ITPMGG Sbjct: 264 VARAGQRGYHSRTSINHKIYRVGKG-------------DDEANGATSFDRTKKTITPMGG 310 Query: 554 FPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRF 733 F HYGE+ NDFIM+KGC G +KR++TLRKSL+T ++ +EE+ LK+IDT+SKFG GRF Sbjct: 311 FVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRF 370 Query: 734 QTSDEKRTFMGPLKKD 781 QT EK FMG LKKD Sbjct: 371 QTPAEKHAFMGTLKKD 386
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,931,356 Number of Sequences: 369166 Number of extensions: 1793801 Number of successful extensions: 4454 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4261 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4395 length of database: 68,354,980 effective HSP length: 109 effective length of database: 48,218,865 effective search space used: 8245425915 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)