Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_B09
(369 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O16797|RL3_DROME 60S ribosomal protein L3 144 5e-35
sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4) 133 1e-31
sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein) 133 1e-31
sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like 133 1e-31
sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA... 133 1e-31
sp|P39872|RL3_BOVIN 60S ribosomal protein L3 132 2e-31
sp|P49149|RL3_TOXCA 60S ribosomal protein L3 124 7e-29
sp|P35684|RL3_ORYSA 60S ribosomal protein L3 122 3e-28
sp|P14126|RL3_YEAST 60S ribosomal protein L3 (YL1) (RP1) (T... 121 6e-28
sp|P50880|RL3_CAEEL 60S ribosomal protein L3 116 2e-26
>sp|O16797|RL3_DROME 60S ribosomal protein L3
Length = 416
Score = 144 bits (364), Expect = 5e-35
Identities = 68/95 (71%), Positives = 79/95 (83%)
Frame = +1
Query: 4 KNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTS 183
K+ITPMGGFPHYGEVNNDF+MIKGCC+G+KKR+ITLRKSL K+ +E+I LKFIDTS
Sbjct: 312 KSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTS 371
Query: 184 SKFGHGRFQTSDEKRTFMGPLKKDRLRQEAKEIAA 288
SK GHGRFQT +K FMGPLKKDRL++EA A
Sbjct: 372 SKMGHGRFQTPADKLAFMGPLKKDRLKEEAAATTA 406
>sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4)
Length = 403
Score = 133 bits (335), Expect = 1e-31
Identities = 61/89 (68%), Positives = 75/89 (84%)
Frame = +1
Query: 4 KNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTS 183
K+I P+GGF HYGEV NDFIM+KGC +G KKR++TLRKSL K+R +E+I LKFIDT+
Sbjct: 312 KSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTT 371
Query: 184 SKFGHGRFQTSDEKRTFMGPLKKDRLRQE 270
SKFGHGRFQT +EK+ FMGPLKKDR+ +E
Sbjct: 372 SKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein)
Length = 403
Score = 133 bits (335), Expect = 1e-31
Identities = 61/89 (68%), Positives = 75/89 (84%)
Frame = +1
Query: 4 KNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTS 183
K+I P+GGF HYGEV NDFIM+KGC +G KKR++TLRKSL K+R +E+I LKFIDT+
Sbjct: 312 KSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTT 371
Query: 184 SKFGHGRFQTSDEKRTFMGPLKKDRLRQE 270
SKFGHGRFQT +EK+ FMGPLKKDR+ +E
Sbjct: 372 SKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
>sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like
Length = 407
Score = 133 bits (334), Expect = 1e-31
Identities = 63/92 (68%), Positives = 74/92 (80%)
Frame = +1
Query: 4 KNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTS 183
K+ITP+GGFPHYGEVNNDF+M+KGC G KKR+ITLRKSL H ++ +E I LKFIDT+
Sbjct: 312 KSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTT 371
Query: 184 SKFGHGRFQTSDEKRTFMGPLKKDRLRQEAKE 279
SKFGHGRFQT+ EKR FMGP KK L +E E
Sbjct: 372 SKFGHGRFQTAQEKRAFMGPQKK-HLEKETPE 402
>sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA binding protein B)
(TARBP-B)
Length = 403
Score = 133 bits (334), Expect = 1e-31
Identities = 60/89 (67%), Positives = 75/89 (84%)
Frame = +1
Query: 4 KNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTS 183
K+I P+GGF HYGEV NDF+M+KGC +G KKR++TLRKSL K+R +E+I LKFIDT+
Sbjct: 312 KSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTT 371
Query: 184 SKFGHGRFQTSDEKRTFMGPLKKDRLRQE 270
SKFGHGRFQT +EK+ FMGPLKKDR+ +E
Sbjct: 372 SKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
>sp|P39872|RL3_BOVIN 60S ribosomal protein L3
Length = 403
Score = 132 bits (333), Expect = 2e-31
Identities = 60/89 (67%), Positives = 75/89 (84%)
Frame = +1
Query: 4 KNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTS 183
K+I P+GGF HYGEV NDF+M+KGC +G KKR++TLRKSL K+R +E+I LKFIDT+
Sbjct: 312 KSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTT 371
Query: 184 SKFGHGRFQTSDEKRTFMGPLKKDRLRQE 270
SKFGHGRFQT +EK+ FMGPLKKDR+ +E
Sbjct: 372 SKFGHGRFQTVEEKKAFMGPLKKDRIAKE 400
>sp|P49149|RL3_TOXCA 60S ribosomal protein L3
Length = 402
Score = 124 bits (311), Expect = 7e-29
Identities = 59/88 (67%), Positives = 70/88 (79%)
Frame = +1
Query: 4 KNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTS 183
K++ PMGGFPHYG VN DF+MI+GCC+G+KKR ITLRKSL K+ E+I LK+IDTS
Sbjct: 309 KSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTS 368
Query: 184 SKFGHGRFQTSDEKRTFMGPLKKDRLRQ 267
SKFGHGRFQT EKR FMG LKKD + +
Sbjct: 369 SKFGHGRFQTHAEKRAFMGKLKKDLIAE 396
>sp|P35684|RL3_ORYSA 60S ribosomal protein L3
Length = 389
Score = 122 bits (305), Expect = 3e-28
Identities = 56/82 (68%), Positives = 67/82 (81%)
Frame = +1
Query: 4 KNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTS 183
K+ITPMGGFPHYG V D++MIKGCC+G KKR++TLR+SL + +EEI LKFIDTS
Sbjct: 307 KDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTS 366
Query: 184 SKFGHGRFQTSDEKRTFMGPLK 249
SKFGHGRFQT+DEK+ F G LK
Sbjct: 367 SKFGHGRFQTTDEKQRFFGKLK 388
>sp|P14126|RL3_YEAST 60S ribosomal protein L3 (YL1) (RP1) (Trichodermin resistance
protein)
Length = 387
Score = 121 bits (303), Expect = 6e-28
Identities = 55/84 (65%), Positives = 67/84 (79%)
Frame = +1
Query: 4 KNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTS 183
K ITPMGGF HYGE+ NDFIM+KGC G +KR++TLRKSL+T ++ +EE+ LK+IDT+
Sbjct: 303 KTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTA 362
Query: 184 SKFGHGRFQTSDEKRTFMGPLKKD 255
SKFG GRFQT EK FMG LKKD
Sbjct: 363 SKFGKGRFQTPAEKHAFMGTLKKD 386
>sp|P50880|RL3_CAEEL 60S ribosomal protein L3
Length = 401
Score = 116 bits (290), Expect = 2e-26
Identities = 61/92 (66%), Positives = 71/92 (77%), Gaps = 1/92 (1%)
Frame = +1
Query: 4 KNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTS 183
K ITPMGGFP YG VN D+IM++G +G KKRLITLRKSL T K+ E+I LK+IDTS
Sbjct: 309 KTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTS 368
Query: 184 SKFGHGRFQTSDEKRTFMGPLKKDRLRQ-EAK 276
SK GHGRFQT+ EKR FMG LK+D L + EAK
Sbjct: 369 SKTGHGRFQTTAEKRAFMGKLKRDFLAEAEAK 400
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,333,266
Number of Sequences: 369166
Number of extensions: 659008
Number of successful extensions: 1402
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 68,354,980
effective HSP length: 89
effective length of database: 51,913,565
effective search space used: 1713147645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)