Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_G02
(840 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O16797|RL3_DROME 60S ribosomal protein L3 402 e-112
sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4) 381 e-105
sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein) 381 e-105
sp|P49149|RL3_TOXCA 60S ribosomal protein L3 379 e-105
sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA... 377 e-104
sp|P39872|RL3_BOVIN 60S ribosomal protein L3 376 e-104
sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like 368 e-101
sp|P50880|RL3_CAEEL 60S ribosomal protein L3 361 1e-99
sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3 361 1e-99
sp|P35684|RL3_ORYSA 60S ribosomal protein L3 322 1e-87
>sp|O16797|RL3_DROME 60S ribosomal protein L3
Length = 416
Score = 402 bits (1032), Expect = e-112
Identities = 193/270 (71%), Positives = 223/270 (82%)
Frame = +3
Query: 30 FPLSSVHFLDDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGT 209
F +S + DD GKK IE DF KM RYCKVIRVIAH+Q++++ QRQKKAH+ EIQLNGG+
Sbjct: 130 FTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGS 189
Query: 210 VSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLR 389
+ +KV WAREHLEK + +SNVF +EMIDC+G+TKGKGF+GVTSRWHTKKL RKTHKGLR
Sbjct: 190 IEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLR 249
Query: 390 KVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNA 569
KVACIG WHP+RVS VARAGQKGYHHRTEINKKIYRIG G+ T+ D IK NA
Sbjct: 250 KVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTK------DGKVIKNNA 303
Query: 570 STDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEI 749
ST+YDLT K+ITPMGGFPHYGEVNNDF+MIKGCC+G+KKR+ITLRKSL K+ +E+I
Sbjct: 304 STEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQI 363
Query: 750 VLKFIDTSSKFGHGRFQTSDEKRTFMGPLK 839
LKFIDTSSK GHGRFQT +K FMGPLK
Sbjct: 364 KLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393
Score = 30.4 bits (67), Expect = 6.4
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -3
Query: 70 FPRSSKKWTEDRGKKLIE 17
F ++SKKWT+D GKK IE
Sbjct: 130 FTKASKKWTDDLGKKSIE 147
>sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4)
Length = 403
Score = 381 bits (979), Expect = e-105
Identities = 182/261 (69%), Positives = 217/261 (83%)
Frame = +3
Query: 57 DDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAR 236
DD GKK +E DFN MK+YC+VIR+IAHTQM++L RQKKAH+ EIQ+NGGTV+ K+DWAR
Sbjct: 139 DDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWAR 198
Query: 237 EHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWH 416
E LE+QV ++ VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH+GLRKVACIG WH
Sbjct: 199 ERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWH 258
Query: 417 PARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVK 596
PARV+F+VARAGQKGYHHRTEINKKIY+IG G + D IK NASTDYDL+ K
Sbjct: 259 PARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIK------DGKLIKNNASTDYDLSDK 312
Query: 597 NITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSS 776
+I P+GGF HYGEV NDFIM+KGC +G KKR++TLRKSL K+R +E+I LKFIDT+S
Sbjct: 313 SINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTS 372
Query: 777 KFGHGRFQTSDEKRTFMGPLK 839
KFGHGRFQT +EK+ FMGPLK
Sbjct: 373 KFGHGRFQTMEEKKAFMGPLK 393
>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein)
Length = 403
Score = 381 bits (978), Expect = e-105
Identities = 182/261 (69%), Positives = 216/261 (82%)
Frame = +3
Query: 57 DDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAR 236
DD GKK +E DFN MK+YC+VIR+IAHTQM++L RQKKAH+ EIQ+NGGTV+ K+DWAR
Sbjct: 139 DDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWAR 198
Query: 237 EHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWH 416
E LE+QV ++ VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH+GLRKVACIG WH
Sbjct: 199 ERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWH 258
Query: 417 PARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVK 596
PARV+F VARAGQKGYHHRTEINKKIY+IG G + D IK NASTDYDL+ K
Sbjct: 259 PARVAFTVARAGQKGYHHRTEINKKIYKIGQGYLIK------DGKLIKNNASTDYDLSDK 312
Query: 597 NITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSS 776
+I P+GGF HYGEV NDFIM+KGC +G KKR++TLRKSL K+R +E+I LKFIDT+S
Sbjct: 313 SINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTS 372
Query: 777 KFGHGRFQTSDEKRTFMGPLK 839
KFGHGRFQT +EK+ FMGPLK
Sbjct: 373 KFGHGRFQTMEEKKAFMGPLK 393
>sp|P49149|RL3_TOXCA 60S ribosomal protein L3
Length = 402
Score = 379 bits (973), Expect = e-105
Identities = 181/261 (69%), Positives = 210/261 (80%)
Frame = +3
Query: 57 DDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAR 236
D+ G+K IE D NKMK+YC IRVIAHTQMK++ R+KKAHI EIQ+NGGTV+ KVDWAR
Sbjct: 139 DEDGRKSIEADLNKMKKYCSKIRVIAHTQMKVMKHREKKAHIMEIQINGGTVAEKVDWAR 198
Query: 237 EHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWH 416
EHLEKQV + +VF+ +EMIDCIG+TKGKGF+GVTSRWHTKKL RKTHKGLRKVACIG WH
Sbjct: 199 EHLEKQVPVDSVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWH 258
Query: 417 PARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVK 596
P+RV F VARAGQKGYHHRTE+NKKIYR+G T++ K N TDYD+T K
Sbjct: 259 PSRVQFTVARAGQKGYHHRTEVNKKIYRLGKSCLTEEG---------KKNGGTDYDITEK 309
Query: 597 NITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSS 776
++ PMGGFPHYG VN DF+MI+GCC+G+KKR ITLRKSL K+ E+I LK+IDTSS
Sbjct: 310 SVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSS 369
Query: 777 KFGHGRFQTSDEKRTFMGPLK 839
KFGHGRFQT EKR FMG LK
Sbjct: 370 KFGHGRFQTHAEKRAFMGKLK 390
>sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA binding protein B)
(TARBP-B)
Length = 403
Score = 377 bits (969), Expect = e-104
Identities = 180/261 (68%), Positives = 217/261 (83%)
Frame = +3
Query: 57 DDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAR 236
D+ GKK +E DF+ MK+YC+VIRVIAHTQM++L RQKKAH+ EIQ+NGGTV+ K+DWAR
Sbjct: 139 DEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWAR 198
Query: 237 EHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWH 416
E LE+QV ++ VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH+GLRKVACIG WH
Sbjct: 199 ERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWH 258
Query: 417 PARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVK 596
PARV+F+VARAGQKGYHHRTEINKKIY+IG G + D IK NASTDYDL+ K
Sbjct: 259 PARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIK------DGKLIKNNASTDYDLSDK 312
Query: 597 NITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSS 776
+I P+GGF HYGEV NDF+M+KGC +G KKR++TLRKSL K+R +E+I LKFIDT+S
Sbjct: 313 SINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTS 372
Query: 777 KFGHGRFQTSDEKRTFMGPLK 839
KFGHGRFQT +EK+ FMGPLK
Sbjct: 373 KFGHGRFQTMEEKKAFMGPLK 393
>sp|P39872|RL3_BOVIN 60S ribosomal protein L3
Length = 403
Score = 376 bits (966), Expect = e-104
Identities = 180/261 (68%), Positives = 216/261 (82%)
Frame = +3
Query: 57 DDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAR 236
D GKK +E DF+ MK+YC+VIRVIAHTQM++L RQKKAH+ E+Q+NGGTV+ K+DWAR
Sbjct: 139 DADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEVQVNGGTVAEKLDWAR 198
Query: 237 EHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWH 416
E LE+QV +S VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH+GLRKVACIG WH
Sbjct: 199 ERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWH 258
Query: 417 PARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVK 596
PARV+F+VARAGQKGYHHRTEINKKIY+IG G + D IK NASTDYDL+ K
Sbjct: 259 PARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIK------DGKLIKNNASTDYDLSDK 312
Query: 597 NITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSS 776
+I P+GGF HYGEV NDF+M+KGC +G KKR++TLRKSL K+R +E+I LKFIDT+S
Sbjct: 313 SINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTS 372
Query: 777 KFGHGRFQTSDEKRTFMGPLK 839
KFGHGRFQT +EK+ FMGPLK
Sbjct: 373 KFGHGRFQTVEEKKAFMGPLK 393
>sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like
Length = 407
Score = 368 bits (945), Expect = e-101
Identities = 178/261 (68%), Positives = 208/261 (79%)
Frame = +3
Query: 57 DDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAR 236
D GKK ++ DF MK+YCKVIRVI HTQMK+L RQKKAHI EIQLNGGTV+ KV WA+
Sbjct: 139 DTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQ 198
Query: 237 EHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWH 416
LEKQV + +VFS +E+ID I +TKG+G +GVTSRWHTKKL RKTHKGLRKVACIG WH
Sbjct: 199 ARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWH 258
Query: 417 PARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVK 596
PARV ++ARAGQKGYHHRTE+NKKI+RIG G + D +K NAST YD+T K
Sbjct: 259 PARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHME------DGKLVKNNASTSYDVTAK 312
Query: 597 NITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSS 776
+ITP+GGFPHYGEVNNDF+M+KGC G KKR+ITLRKSL H ++ +E I LKFIDT+S
Sbjct: 313 SITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTS 372
Query: 777 KFGHGRFQTSDEKRTFMGPLK 839
KFGHGRFQT+ EKR FMGP K
Sbjct: 373 KFGHGRFQTAQEKRAFMGPQK 393
>sp|P50880|RL3_CAEEL 60S ribosomal protein L3
Length = 401
Score = 361 bits (927), Expect = 1e-99
Identities = 177/261 (67%), Positives = 206/261 (78%)
Frame = +3
Query: 57 DDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAR 236
D+ GKKLIE DF K+K+YC IRVIAHTQMK+L +RQKKAH+ EIQ+NGGT+ KVDWAR
Sbjct: 139 DEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAR 198
Query: 237 EHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWH 416
EHLEKQV + VF+ +EMID IG+T+G GF+GVTSRWHTKKL RKTHKGLRKVACIG WH
Sbjct: 199 EHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWH 258
Query: 417 PARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVK 596
P+RV+F VARAGQKG+HHRT IN KIYRIG T++ K N ST++DLT K
Sbjct: 259 PSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG---------KNNGSTEFDLTQK 309
Query: 597 NITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSS 776
ITPMGGFP YG VN D+IM++G +G KKRLITLRKSL T K+ E+I LK+IDTSS
Sbjct: 310 TITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSS 369
Query: 777 KFGHGRFQTSDEKRTFMGPLK 839
K GHGRFQT+ EKR FMG LK
Sbjct: 370 KTGHGRFQTTAEKRAFMGKLK 390
>sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3
Length = 401
Score = 361 bits (927), Expect = 1e-99
Identities = 176/261 (67%), Positives = 205/261 (78%)
Frame = +3
Query: 57 DDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAR 236
D+ GKKLIE DF K+K+YC IRVIAHTQMK+L +RQKKAH+ EIQ+NGGT+ KVDWAR
Sbjct: 139 DEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQINGGTIEQKVDWAR 198
Query: 237 EHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWH 416
EHLEKQ+ + VFS +EMID IG+TKG GF+GVTSRWHTKKL RKTHKGLRKVACIG WH
Sbjct: 199 EHLEKQIQVDTVFSQDEMIDTIGVTKGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWH 258
Query: 417 PARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVK 596
P+RV+F VARAGQKG+HHRT IN KIYRIG T++ K N ST++DLT K
Sbjct: 259 PSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG---------KNNGSTEFDLTQK 309
Query: 597 NITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSS 776
I PMGGFP YG VN D++M++G +G KKRLITLRKSL T K+ E+I LK+IDTSS
Sbjct: 310 TINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSS 369
Query: 777 KFGHGRFQTSDEKRTFMGPLK 839
K GHGRFQT+ EKR FMG LK
Sbjct: 370 KTGHGRFQTTAEKRAFMGKLK 390
>sp|P35684|RL3_ORYSA 60S ribosomal protein L3
Length = 389
Score = 322 bits (824), Expect = 1e-87
Identities = 156/271 (57%), Positives = 201/271 (74%), Gaps = 1/271 (0%)
Frame = +3
Query: 30 FPLSSVHFLDDRGKKLIELDFNKMKRYCKVIRVIAHTQM-KMLNQRQKKAHITEIQLNGG 206
F ++ + D GKK I++ KMK+Y ++RVIAHTQ+ KM +QKKAH+ EIQ+NGG
Sbjct: 130 FTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGG 189
Query: 207 TVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGL 386
T+++KVD+ + EK++ + VF +EMID IG+TKGKG+EGV +RW +L RKTH+GL
Sbjct: 190 TIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL 249
Query: 387 RKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGN 566
RKVACIG WHPARVS+ VARAGQ GYHHRTE+NKK+Y+I G Q++ A
Sbjct: 250 RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI--GKSGQESHA---------- 297
Query: 567 ASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITLRKSLHTTHKKRMMEE 746
A T++D T K+ITPMGGFPHYG V D++MIKGCC+G KKR++TLR+SL + +EE
Sbjct: 298 ACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEE 357
Query: 747 IVLKFIDTSSKFGHGRFQTSDEKRTFMGPLK 839
I LKFIDTSSKFGHGRFQT+DEK+ F G LK
Sbjct: 358 IKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,858,848
Number of Sequences: 369166
Number of extensions: 1881671
Number of successful extensions: 4827
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4769
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)