Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_L23
(741 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O16797|RL3_DROME 60S ribosomal protein L3 388 e-108
sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4) 375 e-104
sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein) 375 e-104
sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA... 372 e-103
sp|P39872|RL3_BOVIN 60S ribosomal protein L3 371 e-103
sp|P49149|RL3_TOXCA 60S ribosomal protein L3 370 e-102
sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3 356 4e-98
sp|P50880|RL3_CAEEL 60S ribosomal protein L3 354 1e-97
sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like 347 2e-95
sp|P22738|RL3B_ARATH 60S ribosomal protein L3 312 5e-85
>sp|O16797|RL3_DROME 60S ribosomal protein L3
Length = 416
Score = 388 bits (997), Expect = e-108
Identities = 182/247 (73%), Positives = 209/247 (84%)
Frame = +1
Query: 1 KEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKSKKKA 180
KEV + VT+LETPPM++VG VGYIETP GLR VW +HLSEECRRRFYKNWYKSKKKA
Sbjct: 70 KEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKA 129
Query: 181 FTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGT 360
FT++SKKWT+D GKK IE DF KM RYCKVIRVIAH+Q++++ QRQKKAH+ EIQLNGG+
Sbjct: 130 FTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGS 189
Query: 361 VSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLR 540
+ +KV WAREHLEK + +SNVF +EMIDC+G+TKGKGF+GVTSRWHTKKL RKTHKGLR
Sbjct: 190 IEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLR 249
Query: 541 KVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNA 720
KVACIG WHP+RVS VARAGQKGYHHRTEINKKIYRIG G+ T+ D IK NA
Sbjct: 250 KVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTK------DGKVIKNNA 303
Query: 721 STDYDLT 741
ST+YDLT
Sbjct: 304 STEYDLT 310
>sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4)
Length = 403
Score = 375 bits (964), Expect = e-104
Identities = 175/247 (70%), Positives = 211/247 (85%)
Frame = +1
Query: 1 KEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKSKKKA 180
KEV + VTI+ETPPM++VG+VGY+ETPRGLRTFKTV+ EH+S+EC+RRFYKNW+KSKKKA
Sbjct: 70 KEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKA 129
Query: 181 FTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGT 360
FT+ KKW +D GKK +E DFN MK+YC+VIR+IAHTQM++L RQKKAH+ EIQ+NGGT
Sbjct: 130 FTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKAHLMEIQVNGGT 189
Query: 361 VSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLR 540
V+ K+DWARE LE+QV ++ VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH+GLR
Sbjct: 190 VAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLR 249
Query: 541 KVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNA 720
KVACIG WHPARV+F+VARAGQKGYHHRTEINKKIY+IG G + D IK NA
Sbjct: 250 KVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIK------DGKLIKNNA 303
Query: 721 STDYDLT 741
STDYDL+
Sbjct: 304 STDYDLS 310
>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein)
Length = 403
Score = 375 bits (963), Expect = e-104
Identities = 175/247 (70%), Positives = 210/247 (85%)
Frame = +1
Query: 1 KEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKSKKKA 180
KEV + VTI+ETPPM++VG+VGY+ETPRGLRTFKTV+ EH+S+EC+RRFYKNW+KSKKKA
Sbjct: 70 KEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKA 129
Query: 181 FTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGT 360
FT+ KKW +D GKK +E DFN MK+YC+VIR+IAHTQM++L RQKKAH+ EIQ+NGGT
Sbjct: 130 FTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKAHLMEIQVNGGT 189
Query: 361 VSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLR 540
V+ K+DWARE LE+QV ++ VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH+GLR
Sbjct: 190 VAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLR 249
Query: 541 KVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNA 720
KVACIG WHPARV+F VARAGQKGYHHRTEINKKIY+IG G + D IK NA
Sbjct: 250 KVACIGAWHPARVAFTVARAGQKGYHHRTEINKKIYKIGQGYLIK------DGKLIKNNA 303
Query: 721 STDYDLT 741
STDYDL+
Sbjct: 304 STDYDLS 310
>sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA binding protein B)
(TARBP-B)
Length = 403
Score = 372 bits (955), Expect = e-103
Identities = 174/247 (70%), Positives = 211/247 (85%)
Frame = +1
Query: 1 KEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKSKKKA 180
KEV + VTI+ETPPM++VG+VGY+ETPRGLRTFKTV+ EH+S+EC+RRFYKNW+KSKKKA
Sbjct: 70 KEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKA 129
Query: 181 FTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGT 360
FT+ KKW ++ GKK +E DF+ MK+YC+VIRVIAHTQM++L RQKKAH+ EIQ+NGGT
Sbjct: 130 FTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGT 189
Query: 361 VSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLR 540
V+ K+DWARE LE+QV ++ VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH+GLR
Sbjct: 190 VAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLR 249
Query: 541 KVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNA 720
KVACIG WHPARV+F+VARAGQKGYHHRTEINKKIY+IG G + D IK NA
Sbjct: 250 KVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIK------DGKLIKNNA 303
Query: 721 STDYDLT 741
STDYDL+
Sbjct: 304 STDYDLS 310
>sp|P39872|RL3_BOVIN 60S ribosomal protein L3
Length = 403
Score = 371 bits (953), Expect = e-103
Identities = 174/247 (70%), Positives = 210/247 (85%)
Frame = +1
Query: 1 KEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKSKKKA 180
KEV + VTI+ETPPM+IVG+VGY+ETPRGLRTFKT++ EH+S+EC+RRFYKNW+KSKKKA
Sbjct: 70 KEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKA 129
Query: 181 FTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGT 360
FT+ KKW + GKK +E DF+ MK+YC+VIRVIAHTQM++L RQKKAH+ E+Q+NGGT
Sbjct: 130 FTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEVQVNGGT 189
Query: 361 VSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLR 540
V+ K+DWARE LE+QV +S VF +EMID IG+TKGKG++GVTSRWHTKKL RKTH+GLR
Sbjct: 190 VAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLR 249
Query: 541 KVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNA 720
KVACIG WHPARV+F+VARAGQKGYHHRTEINKKIY+IG G + D IK NA
Sbjct: 250 KVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIK------DGKLIKNNA 303
Query: 721 STDYDLT 741
STDYDL+
Sbjct: 304 STDYDLS 310
>sp|P49149|RL3_TOXCA 60S ribosomal protein L3
Length = 402
Score = 370 bits (949), Expect = e-102
Identities = 172/247 (69%), Positives = 201/247 (81%)
Frame = +1
Query: 1 KEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKSKKKA 180
KEV + VTI E PPM+IVG+VGYI+TPRG R FKTVW EHLSE+CR RFYKNW+ SKKKA
Sbjct: 70 KEVVEAVTIFEAPPMVIVGIVGYIDTPRGPRQFKTVWAEHLSEDCRGRFYKNWHTSKKKA 129
Query: 181 FTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGT 360
F + +KKW ++ G+K IE D NKMK+YC IRVIAHTQMK++ R+KKAHI EIQ+NGGT
Sbjct: 130 FQKHAKKWQDEDGRKSIEADLNKMKKYCSKIRVIAHTQMKVMKHREKKAHIMEIQINGGT 189
Query: 361 VSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLR 540
V+ KVDWAREHLEKQV + +VF+ +EMIDCIG+TKGKGF+GVTSRWHTKKL RKTHKGLR
Sbjct: 190 VAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLR 249
Query: 541 KVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNA 720
KVACIG WHP+RV F VARAGQKGYHHRTE+NKKIYR+G T++ K N
Sbjct: 250 KVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGKSCLTEEG---------KKNG 300
Query: 721 STDYDLT 741
TDYD+T
Sbjct: 301 GTDYDIT 307
>sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3
Length = 401
Score = 356 bits (913), Expect = 4e-98
Identities = 167/247 (67%), Positives = 197/247 (79%)
Frame = +1
Query: 1 KEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKSKKKA 180
KEV + V+I+ETPPM+I GV GYI+TP+G R T+W EHLSEE RRRFY NW KSKKKA
Sbjct: 70 KEVVEAVSIIETPPMVIAGVTGYIDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKA 129
Query: 181 FTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGT 360
FT+ +KKW ++ GKKLIE DF K+K+YC IRVIAHTQMK+L +RQKKAH+ EIQ+NGGT
Sbjct: 130 FTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQINGGT 189
Query: 361 VSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLR 540
+ KVDWAREHLEKQ+ + VFS +EMID IG+TKG GF+GVTSRWHTKKL RKTHKGLR
Sbjct: 190 IEQKVDWAREHLEKQIQVDTVFSQDEMIDTIGVTKGHGFKGVTSRWHTKKLPRKTHKGLR 249
Query: 541 KVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNA 720
KVACIG WHP+RV+F VARAGQKG+HHRT IN KIYRIG T++ K N
Sbjct: 250 KVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG---------KNNG 300
Query: 721 STDYDLT 741
ST++DLT
Sbjct: 301 STEFDLT 307
>sp|P50880|RL3_CAEEL 60S ribosomal protein L3
Length = 401
Score = 354 bits (909), Expect = 1e-97
Identities = 166/247 (67%), Positives = 197/247 (79%)
Frame = +1
Query: 1 KEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKSKKKA 180
KEV + VTI+ETPPM+I GV GY++TP+G R T+W EHLSEE RRRFY NW KSKKKA
Sbjct: 70 KEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKA 129
Query: 181 FTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGT 360
FT+ +KKW ++ GKKLIE DF K+K+YC IRVIAHTQMK+L +RQKKAH+ EIQ+NGGT
Sbjct: 130 FTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGT 189
Query: 361 VSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLR 540
+ KVDWAREHLEKQV + VF+ +EMID IG+T+G GF+GVTSRWHTKKL RKTHKGLR
Sbjct: 190 IEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLR 249
Query: 541 KVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNA 720
KVACIG WHP+RV+F VARAGQKG+HHRT IN KIYRIG T++ K N
Sbjct: 250 KVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG---------KNNG 300
Query: 721 STDYDLT 741
ST++DLT
Sbjct: 301 STEFDLT 307
>sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like
Length = 407
Score = 347 bits (890), Expect = 2e-95
Identities = 164/247 (66%), Positives = 201/247 (81%)
Frame = +1
Query: 1 KEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKSKKKA 180
+E + VTI+ETPP+++VGVVGY+ TPRGLR+FKT++ EHLS+ECRRRFYK+W+KSKKKA
Sbjct: 70 REEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKA 129
Query: 181 FTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAHITEIQLNGGT 360
FT++ K+W + GKK ++ DF MK+YCKVIRVI HTQMK+L RQKKAHI EIQLNGGT
Sbjct: 130 FTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGT 189
Query: 361 VSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGLR 540
V+ KV WA+ LEKQV + +VFS +E+ID I +TKG+G +GVTSRWHTKKL RKTHKGLR
Sbjct: 190 VAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLR 249
Query: 541 KVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKTQQTEAQNDITKIKGNA 720
KVACIG WHPARV ++ARAGQKGYHHRTE+NKKI+RIG G + D +K NA
Sbjct: 250 KVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHME------DGKLVKNNA 303
Query: 721 STDYDLT 741
ST YD+T
Sbjct: 304 STSYDVT 310
>sp|P22738|RL3B_ARATH 60S ribosomal protein L3
Length = 390
Score = 312 bits (800), Expect = 5e-85
Identities = 149/237 (62%), Positives = 184/237 (77%), Gaps = 2/237 (0%)
Frame = +1
Query: 1 KEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFYKNWYKSKKKA 180
KE + VTI+ETPPM++VGVVGY++TPRGLR+ TVW +HLSEE RRRFYKNW KSKKKA
Sbjct: 70 KETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKNWAKSKKKA 129
Query: 181 FTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQM-KMLNQRQKKAHITEIQLNGG 357
FTR SKK + GKK I+ KMK+YC VIRV+AHTQ+ KM +QKKAH+ EIQ+NGG
Sbjct: 130 FTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNEIQINGG 189
Query: 358 TVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKKLQRKTHKGL 537
++ KVD+A EKQV + +F +EMID IG+TKGKG+EGV +RW +L RKTH+GL
Sbjct: 190 DIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL 249
Query: 538 RKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIG-LGVKTQQTEAQNDITK 705
RKVACIG WHPARVS+ VARAGQ GYHHRTE+NKK+YR+G +G +T + D T+
Sbjct: 250 RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVGQETHSAMTEYDRTE 306
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,838,818
Number of Sequences: 369166
Number of extensions: 1481284
Number of successful extensions: 4721
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4665
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6679696800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)