Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_O02
(782 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O16797|RL3_DROME 60S ribosomal protein L3 377 e-104
sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4) 354 1e-97
sp|P39872|RL3_BOVIN 60S ribosomal protein L3 354 1e-97
sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA... 354 2e-97
sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein) 354 2e-97
sp|P49149|RL3_TOXCA 60S ribosomal protein L3 352 5e-97
sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like 341 2e-93
sp|P50880|RL3_CAEEL 60S ribosomal protein L3 333 3e-91
sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3 332 5e-91
sp|P14126|RL3_YEAST 60S ribosomal protein L3 (YL1) (RP1) (T... 305 7e-83
>sp|O16797|RL3_DROME 60S ribosomal protein L3
Length = 416
Score = 377 bits (968), Expect = e-104
Identities = 179/250 (71%), Positives = 209/250 (83%)
Frame = +3
Query: 3 IAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGI 182
IAH+Q++++ QRQKKAH+ EIQLNGG++ +KV WAREHLEK + +SNVF +EMIDC+G+
Sbjct: 163 IAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGV 222
Query: 183 TKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINK 362
TKGKGF+GVTSRWHTKKL RKTHKGLRKVACIG WHP+RVS VARAGQKGYHHRTEINK
Sbjct: 223 TKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINK 282
Query: 363 KIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGC 542
KIYRIG G+ T+ D IK NAST+YDLT K+ITPMGGFPHYGEVNNDF+MIKGC
Sbjct: 283 KIYRIGAGIHTK------DGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGC 336
Query: 543 CMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDR 722
C+G+KKR+ITLRKSL K+ +E+I LKFIDTSSK GHGRFQT +K FMGPLKKDR
Sbjct: 337 CIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDR 396
Query: 723 LRQEAKEIAA 752
L++EA A
Sbjct: 397 LKEEAAATTA 406
>sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4)
Length = 403
Score = 354 bits (909), Expect = 1e-97
Identities = 170/244 (69%), Positives = 203/244 (83%)
Frame = +3
Query: 3 IAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGI 182
IAHTQM++L RQKKAH+ EIQ+NGGTV+ K+DWARE LE+QV ++ VF +EMID IG+
Sbjct: 163 IAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGV 222
Query: 183 TKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINK 362
TKGKG++GVTSRWHTKKL RKTH+GLRKVACIG WHPARV+F+VARAGQKGYHHRTEINK
Sbjct: 223 TKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINK 282
Query: 363 KIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGC 542
KIY+IG G + D IK NASTDYDL+ K+I P+GGF HYGEV NDFIM+KGC
Sbjct: 283 KIYKIGQGYLIK------DGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGC 336
Query: 543 CMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDR 722
+G KKR++TLRKSL K+R +E+I LKFIDT+SKFGHGRFQT +EK+ FMGPLKKDR
Sbjct: 337 VVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDR 396
Query: 723 LRQE 734
+ +E
Sbjct: 397 IAKE 400
>sp|P39872|RL3_BOVIN 60S ribosomal protein L3
Length = 403
Score = 354 bits (909), Expect = 1e-97
Identities = 169/244 (69%), Positives = 203/244 (83%)
Frame = +3
Query: 3 IAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGI 182
IAHTQM++L RQKKAH+ E+Q+NGGTV+ K+DWARE LE+QV +S VF +EMID IG+
Sbjct: 163 IAHTQMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGV 222
Query: 183 TKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINK 362
TKGKG++GVTSRWHTKKL RKTH+GLRKVACIG WHPARV+F+VARAGQKGYHHRTEINK
Sbjct: 223 TKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINK 282
Query: 363 KIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGC 542
KIY+IG G + D IK NASTDYDL+ K+I P+GGF HYGEV NDF+M+KGC
Sbjct: 283 KIYKIGQGYLIK------DGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGC 336
Query: 543 CMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDR 722
+G KKR++TLRKSL K+R +E+I LKFIDT+SKFGHGRFQT +EK+ FMGPLKKDR
Sbjct: 337 VVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDR 396
Query: 723 LRQE 734
+ +E
Sbjct: 397 IAKE 400
>sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA binding protein B)
(TARBP-B)
Length = 403
Score = 354 bits (908), Expect = 2e-97
Identities = 169/244 (69%), Positives = 203/244 (83%)
Frame = +3
Query: 3 IAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGI 182
IAHTQM++L RQKKAH+ EIQ+NGGTV+ K+DWARE LE+QV ++ VF +EMID IG+
Sbjct: 163 IAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGV 222
Query: 183 TKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINK 362
TKGKG++GVTSRWHTKKL RKTH+GLRKVACIG WHPARV+F+VARAGQKGYHHRTEINK
Sbjct: 223 TKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINK 282
Query: 363 KIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGC 542
KIY+IG G + D IK NASTDYDL+ K+I P+GGF HYGEV NDF+M+KGC
Sbjct: 283 KIYKIGQGYLIK------DGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGC 336
Query: 543 CMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDR 722
+G KKR++TLRKSL K+R +E+I LKFIDT+SKFGHGRFQT +EK+ FMGPLKKDR
Sbjct: 337 VVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDR 396
Query: 723 LRQE 734
+ +E
Sbjct: 397 IAKE 400
>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein)
Length = 403
Score = 354 bits (908), Expect = 2e-97
Identities = 170/244 (69%), Positives = 202/244 (82%)
Frame = +3
Query: 3 IAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGI 182
IAHTQM++L RQKKAH+ EIQ+NGGTV+ K+DWARE LE+QV ++ VF +EMID IG+
Sbjct: 163 IAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGV 222
Query: 183 TKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINK 362
TKGKG++GVTSRWHTKKL RKTH+GLRKVACIG WHPARV+F VARAGQKGYHHRTEINK
Sbjct: 223 TKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFTVARAGQKGYHHRTEINK 282
Query: 363 KIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGC 542
KIY+IG G + D IK NASTDYDL+ K+I P+GGF HYGEV NDFIM+KGC
Sbjct: 283 KIYKIGQGYLIK------DGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGC 336
Query: 543 CMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDR 722
+G KKR++TLRKSL K+R +E+I LKFIDT+SKFGHGRFQT +EK+ FMGPLKKDR
Sbjct: 337 VVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDR 396
Query: 723 LRQE 734
+ +E
Sbjct: 397 IAKE 400
>sp|P49149|RL3_TOXCA 60S ribosomal protein L3
Length = 402
Score = 352 bits (904), Expect = 5e-97
Identities = 168/243 (69%), Positives = 196/243 (80%)
Frame = +3
Query: 3 IAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGI 182
IAHTQMK++ R+KKAHI EIQ+NGGTV+ KVDWAREHLEKQV + +VF+ +EMIDCIG+
Sbjct: 163 IAHTQMKVMKHREKKAHIMEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGV 222
Query: 183 TKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINK 362
TKGKGF+GVTSRWHTKKL RKTHKGLRKVACIG WHP+RV F VARAGQKGYHHRTE+NK
Sbjct: 223 TKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNK 282
Query: 363 KIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGC 542
KIYR+G T++ K N TDYD+T K++ PMGGFPHYG VN DF+MI+GC
Sbjct: 283 KIYRLGKSCLTEEG---------KKNGGTDYDITEKSVNPMGGFPHYGLVNQDFVMIRGC 333
Query: 543 CMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDR 722
C+G+KKR ITLRKSL K+ E+I LK+IDTSSKFGHGRFQT EKR FMG LKKD
Sbjct: 334 CVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLKKDL 393
Query: 723 LRQ 731
+ +
Sbjct: 394 IAE 396
>sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like
Length = 407
Score = 341 bits (874), Expect = 2e-93
Identities = 167/247 (67%), Positives = 195/247 (78%)
Frame = +3
Query: 3 IAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGI 182
I HTQMK+L RQKKAHI EIQLNGGTV+ KV WA+ LEKQV + +VFS +E+ID I +
Sbjct: 163 IVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAV 222
Query: 183 TKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINK 362
TKG+G +GVTSRWHTKKL RKTHKGLRKVACIG WHPARV ++ARAGQKGYHHRTE+NK
Sbjct: 223 TKGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNK 282
Query: 363 KIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGC 542
KI+RIG G + D +K NAST YD+T K+ITP+GGFPHYGEVNNDF+M+KGC
Sbjct: 283 KIFRIGRGPHME------DGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGC 336
Query: 543 CMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDR 722
G KKR+ITLRKSL H ++ +E I LKFIDT+SKFGHGRFQT+ EKR FMGP KK
Sbjct: 337 IAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKK-H 395
Query: 723 LRQEAKE 743
L +E E
Sbjct: 396 LEKETPE 402
>sp|P50880|RL3_CAEEL 60S ribosomal protein L3
Length = 401
Score = 333 bits (854), Expect = 3e-91
Identities = 166/247 (67%), Positives = 194/247 (78%), Gaps = 1/247 (0%)
Frame = +3
Query: 3 IAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGI 182
IAHTQMK+L +RQKKAH+ EIQ+NGGT+ KVDWAREHLEKQV + VF+ +EMID IG+
Sbjct: 163 IAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGV 222
Query: 183 TKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINK 362
T+G GF+GVTSRWHTKKL RKTHKGLRKVACIG WHP+RV+F VARAGQKG+HHRT IN
Sbjct: 223 TRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINN 282
Query: 363 KIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGC 542
KIYRIG T++ K N ST++DLT K ITPMGGFP YG VN D+IM++G
Sbjct: 283 KIYRIGKSALTEEG---------KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGA 333
Query: 543 CMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDR 722
+G KKRLITLRKSL T K+ E+I LK+IDTSSK GHGRFQT+ EKR FMG LK+D
Sbjct: 334 VLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDF 393
Query: 723 LRQ-EAK 740
L + EAK
Sbjct: 394 LAEAEAK 400
>sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3
Length = 401
Score = 332 bits (852), Expect = 5e-91
Identities = 162/243 (66%), Positives = 190/243 (78%)
Frame = +3
Query: 3 IAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGI 182
IAHTQMK+L +RQKKAH+ EIQ+NGGT+ KVDWAREHLEKQ+ + VFS +EMID IG+
Sbjct: 163 IAHTQMKILRRRQKKAHLVEIQINGGTIEQKVDWAREHLEKQIQVDTVFSQDEMIDTIGV 222
Query: 183 TKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINK 362
TKG GF+GVTSRWHTKKL RKTHKGLRKVACIG WHP+RV+F VARAGQKG+HHRT IN
Sbjct: 223 TKGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINN 282
Query: 363 KIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGC 542
KIYRIG T++ K N ST++DLT K I PMGGFP YG VN D++M++G
Sbjct: 283 KIYRIGKSALTEEG---------KNNGSTEFDLTQKTINPMGGFPRYGLVNQDYVMLRGA 333
Query: 543 CMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDR 722
+G KKRLITLRKSL T K+ E+I LK+IDTSSK GHGRFQT+ EKR FMG LK+D
Sbjct: 334 ILGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDF 393
Query: 723 LRQ 731
L +
Sbjct: 394 LAE 396
>sp|P14126|RL3_YEAST 60S ribosomal protein L3 (YL1) (RP1) (Trichodermin resistance
protein)
Length = 387
Score = 305 bits (782), Expect = 7e-83
Identities = 146/239 (61%), Positives = 176/239 (73%)
Frame = +3
Query: 3 IAHTQMKMLNQRQKKAHITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGI 182
+ HTQ++ QKKAH+ EIQLNGG++S KVDWAREH EK V++ +VF NEMID I +
Sbjct: 161 LVHTQIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAV 220
Query: 183 TKGKGFEGVTSRWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINK 362
TKG GFEGVT RW TKKL RKTH+GLRKVACIG WHPA V ++VARAGQ+GYH RT IN
Sbjct: 221 TKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINH 280
Query: 363 KIYRIGLGVKTQQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGC 542
KIYR+G G + N +T +D T K ITPMGGF HYGE+ NDFIM+KGC
Sbjct: 281 KIYRVGKG-------------DDEANGATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGC 327
Query: 543 CMGAKKRLITLRKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKD 719
G +KR++TLRKSL+T ++ +EE+ LK+IDT+SKFG GRFQT EK FMG LKKD
Sbjct: 328 IPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLKKD 386
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,734,284
Number of Sequences: 369166
Number of extensions: 1552167
Number of successful extensions: 3993
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3938
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7357347200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)