Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_G06
(567 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O16797|RL3_DROME 60S ribosomal protein L3 268 7e-72
sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4) 253 2e-67
sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA... 253 2e-67
sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein) 253 2e-67
sp|P39872|RL3_BOVIN 60S ribosomal protein L3 253 3e-67
sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like 248 6e-66
sp|P49149|RL3_TOXCA 60S ribosomal protein L3 239 5e-63
sp|P50880|RL3_CAEEL 60S ribosomal protein L3 226 3e-59
sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3 223 3e-58
sp|P35684|RL3_ORYSA 60S ribosomal protein L3 214 1e-55
>sp|O16797|RL3_DROME 60S ribosomal protein L3
Length = 416
Score = 268 bits (685), Expect = 7e-72
Identities = 130/179 (72%), Positives = 146/179 (81%)
Frame = +1
Query: 1 RWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKT 180
RWHTKKL RKTHKGLRKVACIG WHP+RVS VARAGQKGYHHRTEINKKIYRIG G+ T
Sbjct: 234 RWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHT 293
Query: 181 QQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITL 360
+ + IK NAST+YDLT K+ITPMGGFPHYGEVNNDF+MIKGCC+G+KKR+ITL
Sbjct: 294 KDGKV------IKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITL 347
Query: 361 RKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDRLRQEAKEIAA 537
RKSL K+ +E+I LKFIDTSSK GHGRFQT +K FMGPLKKDRL++EA A
Sbjct: 348 RKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEEAAATTA 406
>sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4)
Length = 403
Score = 253 bits (647), Expect = 2e-67
Identities = 122/173 (70%), Positives = 142/173 (82%)
Frame = +1
Query: 1 RWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKT 180
RWHTKKL RKTH+GLRKVACIG WHPARV+F+VARAGQKGYHHRTEINKKIY+IG G
Sbjct: 234 RWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLI 293
Query: 181 QQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITL 360
+ D IK NASTDYDL+ K+I P+GGF HYGEV NDFIM+KGC +G KKR++TL
Sbjct: 294 K------DGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTL 347
Query: 361 RKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDRLRQE 519
RKSL K+R +E+I LKFIDT+SKFGHGRFQT +EK+ FMGPLKKDR+ +E
Sbjct: 348 RKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
>sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA binding protein B)
(TARBP-B)
Length = 403
Score = 253 bits (646), Expect = 2e-67
Identities = 121/173 (69%), Positives = 142/173 (82%)
Frame = +1
Query: 1 RWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKT 180
RWHTKKL RKTH+GLRKVACIG WHPARV+F+VARAGQKGYHHRTEINKKIY+IG G
Sbjct: 234 RWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLI 293
Query: 181 QQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITL 360
+ D IK NASTDYDL+ K+I P+GGF HYGEV NDF+M+KGC +G KKR++TL
Sbjct: 294 K------DGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTL 347
Query: 361 RKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDRLRQE 519
RKSL K+R +E+I LKFIDT+SKFGHGRFQT +EK+ FMGPLKKDR+ +E
Sbjct: 348 RKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein)
Length = 403
Score = 253 bits (646), Expect = 2e-67
Identities = 122/173 (70%), Positives = 141/173 (81%)
Frame = +1
Query: 1 RWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKT 180
RWHTKKL RKTH+GLRKVACIG WHPARV+F VARAGQKGYHHRTEINKKIY+IG G
Sbjct: 234 RWHTKKLPRKTHRGLRKVACIGAWHPARVAFTVARAGQKGYHHRTEINKKIYKIGQGYLI 293
Query: 181 QQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITL 360
+ D IK NASTDYDL+ K+I P+GGF HYGEV NDFIM+KGC +G KKR++TL
Sbjct: 294 K------DGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTL 347
Query: 361 RKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDRLRQE 519
RKSL K+R +E+I LKFIDT+SKFGHGRFQT +EK+ FMGPLKKDR+ +E
Sbjct: 348 RKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
>sp|P39872|RL3_BOVIN 60S ribosomal protein L3
Length = 403
Score = 253 bits (645), Expect = 3e-67
Identities = 121/173 (69%), Positives = 142/173 (82%)
Frame = +1
Query: 1 RWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKT 180
RWHTKKL RKTH+GLRKVACIG WHPARV+F+VARAGQKGYHHRTEINKKIY+IG G
Sbjct: 234 RWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLI 293
Query: 181 QQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITL 360
+ D IK NASTDYDL+ K+I P+GGF HYGEV NDF+M+KGC +G KKR++TL
Sbjct: 294 K------DGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTL 347
Query: 361 RKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDRLRQE 519
RKSL K+R +E+I LKFIDT+SKFGHGRFQT +EK+ FMGPLKKDR+ +E
Sbjct: 348 RKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKE 400
>sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like
Length = 407
Score = 248 bits (634), Expect = 6e-66
Identities = 120/176 (68%), Positives = 138/176 (78%)
Frame = +1
Query: 1 RWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKT 180
RWHTKKL RKTHKGLRKVACIG WHPARV ++ARAGQKGYHHRTE+NKKI+RIG G
Sbjct: 234 RWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHM 293
Query: 181 QQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITL 360
+ D +K NAST YD+T K+ITP+GGFPHYGEVNNDF+M+KGC G KKR+ITL
Sbjct: 294 E------DGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITL 347
Query: 361 RKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDRLRQEAKE 528
RKSL H ++ +E I LKFIDT+SKFGHGRFQT+ EKR FMGP KK L +E E
Sbjct: 348 RKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKK-HLEKETPE 402
>sp|P49149|RL3_TOXCA 60S ribosomal protein L3
Length = 402
Score = 239 bits (609), Expect = 5e-63
Identities = 115/172 (66%), Positives = 132/172 (76%)
Frame = +1
Query: 1 RWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKT 180
RWHTKKL RKTHKGLRKVACIG WHP+RV F VARAGQKGYHHRTE+NKKIYR+G T
Sbjct: 234 RWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGKSCLT 293
Query: 181 QQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITL 360
++ K N TDYD+T K++ PMGGFPHYG VN DF+MI+GCC+G+KKR ITL
Sbjct: 294 EEG---------KKNGGTDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITL 344
Query: 361 RKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDRLRQ 516
RKSL K+ E+I LK+IDTSSKFGHGRFQT EKR FMG LKKD + +
Sbjct: 345 RKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLKKDLIAE 396
>sp|P50880|RL3_CAEEL 60S ribosomal protein L3
Length = 401
Score = 226 bits (576), Expect = 3e-59
Identities = 116/176 (65%), Positives = 133/176 (75%), Gaps = 1/176 (0%)
Frame = +1
Query: 1 RWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKT 180
RWHTKKL RKTHKGLRKVACIG WHP+RV+F VARAGQKG+HHRT IN KIYRIG T
Sbjct: 234 RWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALT 293
Query: 181 QQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITL 360
++ K N ST++DLT K ITPMGGFP YG VN D+IM++G +G KKRLITL
Sbjct: 294 EEG---------KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITL 344
Query: 361 RKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDRLRQ-EAK 525
RKSL T K+ E+I LK+IDTSSK GHGRFQT+ EKR FMG LK+D L + EAK
Sbjct: 345 RKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAEAEAK 400
>sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3
Length = 401
Score = 223 bits (568), Expect = 3e-58
Identities = 111/172 (64%), Positives = 129/172 (75%)
Frame = +1
Query: 1 RWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKT 180
RWHTKKL RKTHKGLRKVACIG WHP+RV+F VARAGQKG+HHRT IN KIYRIG T
Sbjct: 234 RWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALT 293
Query: 181 QQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITL 360
++ K N ST++DLT K I PMGGFP YG VN D++M++G +G KKRLITL
Sbjct: 294 EEG---------KNNGSTEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITL 344
Query: 361 RKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLKKDRLRQ 516
RKSL T K+ E+I LK+IDTSSK GHGRFQT+ EKR FMG LK+D L +
Sbjct: 345 RKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
>sp|P35684|RL3_ORYSA 60S ribosomal protein L3
Length = 389
Score = 214 bits (545), Expect = 1e-55
Identities = 104/166 (62%), Positives = 125/166 (75%)
Frame = +1
Query: 1 RWHTKKLQRKTHKGLRKVACIGPWHPARVSFAVARAGQKGYHHRTEINKKIYRIGLGVKT 180
RW +L RKTH+GLRKVACIG WHPARVS+ VARAGQ GYHHRTE+NKK+Y+IG
Sbjct: 235 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKS--G 292
Query: 181 QQTEAQNDITKIKGNASTDYDLTVKNITPMGGFPHYGEVNNDFIMIKGCCMGAKKRLITL 360
Q++ A A T++D T K+ITPMGGFPHYG V D++MIKGCC+G KKR++TL
Sbjct: 293 QESHA----------ACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTL 342
Query: 361 RKSLHTTHKKRMMEEIVLKFIDTSSKFGHGRFQTSDEKRTFMGPLK 498
R+SL + +EEI LKFIDTSSKFGHGRFQT+DEK+ F G LK
Sbjct: 343 RQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,526,830
Number of Sequences: 369166
Number of extensions: 1110775
Number of successful extensions: 2662
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2623
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4127973360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)