DrC_00365
- Cluster detail
- GO Category :
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00365 (1100 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotei... 197 6e-50 sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotei... 195 2e-49 sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotei... 184 5e-46 sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoprotei... 181 3e-45 sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoprotei... 181 3e-45 sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotei... 180 7e-45 sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotei... 180 7e-45 sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotei... 180 7e-45 sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein ... 179 1e-44 sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotei... 178 3e-44
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog Length = 342 Score = 197 bits (500), Expect = 6e-50 Identities = 102/198 (51%), Positives = 134/198 (67%), Gaps = 2/198 (1%) Frame = +3 Query: 9 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 188 +KLFIGGL +TT+ESLK + QWGEIVDVVVM+DP+T +SRGFGF+TYS A VDDAQ Sbjct: 17 RKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQN 76 Query: 189 NRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVD 365 RPH+VDG V+ KRA+P+ + PE ATV +LFVG +K + +DLR YF +YGT+V Sbjct: 77 ARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVS 136 Query: 366 -AVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNKSNSKQS 542 A++++ + RGF FV F+D D VDKI ++R HQ+ G+ I+VKKALP+ D Sbjct: 137 AAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHIDVKKALPKGD-------- 188 Query: 543 NPVGNKSTPKGGYNNNTG 596 P G +GG G Sbjct: 189 APGGRGGGGRGGVGGGAG 206
Score = 68.2 bits (165), Expect = 4e-11
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +3
Query: 276 VNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINN-SNGESRGFGFVTFEDTDSVDKII 452
V +LF+G L + L+Q+F ++G IVD V++ + SRGFGF+T+ VD
Sbjct: 16 VRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQ 75
Query: 453 VTRPHQLDGQSIEVKKALPRDD 518
RPH++DG+ +E K+A+PR +
Sbjct: 76 NARPHKVDGRVVEPKRAVPRTE 97
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core protein A1-A) (PEN repeat clone P9) Length = 365 Score = 195 bits (495), Expect = 2e-49 Identities = 98/215 (45%), Positives = 142/215 (66%), Gaps = 16/215 (7%) Frame = +3 Query: 9 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 188 +KLFIGGL +TT+E+LK + +WG IVDVVVM+DP+T +SRGFGF+TYS +S +D+AQ Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK 90 Query: 189 NRPHEVDGIKVDSKRAMPKED-TSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVD 365 +RPH++DG V+ KRA+P++D SP ATV +LFVG LK + +R YF +G IVD Sbjct: 91 SRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVD 150 Query: 366 A-VIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNK------ 524 ++I+ G+ RGF FV F+D D VDK+++ + HQL+G+ ++VKKALP+ +++ Sbjct: 151 INIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQNDQQGGGGG 210 Query: 525 --------SNSKQSNPVGNKSTPKGGYNNNTGSNN 605 ++ + GN GG N N G NN Sbjct: 211 RGGPGGRAGGNRGNMGGGNYGNQNGGGNWNNGGNN 245
Score = 70.5 bits (171), Expect = 8e-12
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = +3
Query: 252 TSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SRGFGFVTFED 428
T PE + +LF+G L ++L+ +F ++G IVD V++ + + SRGFGF+T+
Sbjct: 25 TEPEH---MRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSH 81
Query: 429 TDSVDKIIVTRPHQLDGQSIEVKKALPRDD 518
+ +D+ +RPH++DG+ +E K+A+PR D
Sbjct: 82 SSMIDEAQKSRPHKIDGRVVEPKRAVPRQD 111
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 (hnRNP A2(B)) Length = 358 Score = 184 bits (466), Expect = 5e-46 Identities = 96/213 (45%), Positives = 134/213 (62%), Gaps = 7/213 (3%) Frame = +3 Query: 9 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 188 +KLFIGGL +TTEESL+ FY QWG++ D VVMRDP + +SRGFGFVT+S + VD A Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68 Query: 189 NRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVD 365 RPH +DG V+ KRA+ +E+++ P H TV +LFVG +K + LR+YF EYG I Sbjct: 69 ARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIES 128 Query: 366 A-VIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDD-----NKS 527 +I + +G+ RGFGFVTF D D VDKI++ + H ++G + EV+KAL + + N Sbjct: 129 TEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQDVQNTR 188 Query: 528 NSKQSNPVGNKSTPKGGYNNNTGSNNRYSQDDF 626 N++ N S G + + G N R D + Sbjct: 189 NNRGGNFGFGDSRGGGNFGSGPGGNFRGGSDGY 221
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 / hnRNP B1) Length = 353 Score = 181 bits (459), Expect = 3e-45 Identities = 99/214 (46%), Positives = 135/214 (63%), Gaps = 8/214 (3%) Frame = +3 Query: 9 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 188 +KLFIGGL +TTEESL+ +Y QWG++ D VVMRDP + +SRGFGFVT+S + VD A Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80 Query: 189 NRPHEVDGIKVDSKRAMPKEDT-SPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-V 362 RPH +DG V+ KRA+ +E++ P H TV +LFVG +K + LR YF EYG I Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 140 Query: 363 DAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDD-NKSNSKQ 539 +I + +G+ RGFGFVTF+D D VDKI++ + H ++G + EV+KAL R + + S + Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSR 200 Query: 540 SNPVGN--KSTPKGGYNN---NTGSNNRYSQDDF 626 S GN +GG N GSN R D + Sbjct: 201 SGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGY 234
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 / hnRNP B1) Length = 341 Score = 181 bits (459), Expect = 3e-45 Identities = 99/214 (46%), Positives = 135/214 (63%), Gaps = 8/214 (3%) Frame = +3 Query: 9 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 188 +KLFIGGL +TTEESL+ +Y QWG++ D VVMRDP + +SRGFGFVT+S + VD A Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68 Query: 189 NRPHEVDGIKVDSKRAMPKEDT-SPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-V 362 RPH +DG V+ KRA+ +E++ P H TV +LFVG +K + LR YF EYG I Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 128 Query: 363 DAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDD-NKSNSKQ 539 +I + +G+ RGFGFVTF+D D VDKI++ + H ++G + EV+KAL R + + S + Sbjct: 129 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSR 188 Query: 540 SNPVGN--KSTPKGGYNN---NTGSNNRYSQDDF 626 S GN +GG N GSN R D + Sbjct: 189 SGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGY 222
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 (hnRNP A2(A)) Length = 346 Score = 180 bits (456), Expect = 7e-45 Identities = 94/213 (44%), Positives = 133/213 (62%), Gaps = 7/213 (3%) Frame = +3 Query: 9 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 188 +KLFIGGL +TTEESL+ +Y QWG + D VVMRDP + +SRGFGFVT+S + VD A Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMA 68 Query: 189 NRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVD 365 RPH +DG V+ KRA+ +E+++ P H TV +LFVG +K + LR+YF EYG I Sbjct: 69 TRPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDS 128 Query: 366 -AVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDD-----NKS 527 +I + +G+ RGF FVTF+D D VDKI++ + H ++G + EV+KAL + + N Sbjct: 129 IEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQDVQNTR 188 Query: 528 NSKQSNPVGNKSTPKGGYNNNTGSNNRYSQDDF 626 N++ N S G + + G N R D + Sbjct: 189 NNRGGNFGFGDSRGGGNFGSGPGGNFRGGSDGY 221
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 320 Score = 180 bits (456), Expect = 7e-45 Identities = 91/205 (44%), Positives = 127/205 (61%), Gaps = 2/205 (0%) Frame = +3 Query: 9 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 188 +KLFIGGL +TT+ESL+ + QWG + D VVMRDP T +SRGFGFVTY+ VD A Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73 Query: 189 NRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-V 362 RPH+VDG V+ KRA+ +ED+ P H TV ++FVG +K + LR YF +YG I V Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133 Query: 363 DAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNKSNSKQS 542 ++ + +G+ RGF FVTF+D DSVDKI++ + H ++G + EV+KAL + + S S Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQ 193 Query: 543 NPVGNKSTPKGGYNNNTGSNNRYSQ 617 GG G N+ + + Sbjct: 194 RGRSGSGNFGGGRGGGFGGNDNFGR 218
Score = 74.7 bits (182), Expect = 4e-13
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +3
Query: 225 SKRAMPKEDTSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SR 401
SK PKE PE + +LF+G L + LR +F ++GT+ D V++ + N + SR
Sbjct: 2 SKSESPKE---PE---QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 55
Query: 402 GFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNK 524
GFGFVT+ + VD + RPH++DG+ +E K+A+ R+D++
Sbjct: 56 GFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 372 Score = 180 bits (456), Expect = 7e-45 Identities = 91/205 (44%), Positives = 127/205 (61%), Gaps = 2/205 (0%) Frame = +3 Query: 9 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 188 +KLFIGGL +TT+ESL+ + QWG + D VVMRDP T +SRGFGFVTY+ VD A Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73 Query: 189 NRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-V 362 RPH+VDG V+ KRA+ +ED+ P H TV ++FVG +K + LR YF +YG I V Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133 Query: 363 DAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNKSNSKQS 542 ++ + +G+ RGF FVTF+D DSVDKI++ + H ++G + EV+KAL + + S S Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQ 193 Query: 543 NPVGNKSTPKGGYNNNTGSNNRYSQ 617 GG G N+ + + Sbjct: 194 RGRSGSGNFGGGRGGGFGGNDNFGR 218
Score = 74.7 bits (182), Expect = 4e-13
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +3
Query: 225 SKRAMPKEDTSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SR 401
SK PKE PE + +LF+G L + LR +F ++GT+ D V++ + N + SR
Sbjct: 2 SKSESPKE---PE---QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 55
Query: 402 GFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNK 524
GFGFVT+ + VD + RPH++DG+ +E K+A+ R+D++
Sbjct: 56 GFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP) Length = 320 Score = 179 bits (454), Expect = 1e-44 Identities = 91/205 (44%), Positives = 127/205 (61%), Gaps = 2/205 (0%) Frame = +3 Query: 9 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 188 +KLFIGGL +TT+ESL+ + QWG + D VVMRDP T +SRGFGFVTY+ VD A Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73 Query: 189 NRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-V 362 RPH+VDG V+ KRA+ +ED+ P H TV ++FVG +K + LR YF +YG I V Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133 Query: 363 DAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNKSNSKQS 542 ++ + +G+ RGF FVTF+D DSVDKI++ + H ++G + EV+KAL + + S S Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQEMASASSSQ 193 Query: 543 NPVGNKSTPKGGYNNNTGSNNRYSQ 617 GG G N+ + + Sbjct: 194 RGRSGSGNFGGGRGGGFGGNDNFGR 218
Score = 74.7 bits (182), Expect = 4e-13
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +3
Query: 225 SKRAMPKEDTSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SR 401
SK PKE PE + +LF+G L + LR +F ++GT+ D V++ + N + SR
Sbjct: 2 SKSESPKE---PE---QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 55
Query: 402 GFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNK 524
GFGFVT+ + VD + RPH++DG+ +E K+A+ R+D++
Sbjct: 56 GFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 320 Score = 178 bits (451), Expect = 3e-44 Identities = 90/205 (43%), Positives = 127/205 (61%), Gaps = 2/205 (0%) Frame = +3 Query: 9 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 188 +KLFIGGL +TT+ESL+ + QWG + D VVMRDP T +SRGFGFVTY+ VD A Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 73 Query: 189 NRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-V 362 RPH+VDG V+ KRA+ +ED+ P H TV ++FVG +K + LR YF +YG I V Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133 Query: 363 DAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNKSNSKQS 542 ++ + +G+ RGF FVTF+D +SVDKI++ + H ++G + EV+KAL + + S S Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQ 193 Query: 543 NPVGNKSTPKGGYNNNTGSNNRYSQ 617 GG G N+ + + Sbjct: 194 RGRSGSGNFGGGRGGGFGGNDNFGR 218
Score = 74.7 bits (182), Expect = 4e-13
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +3
Query: 225 SKRAMPKEDTSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SR 401
SK PKE PE + +LF+G L + LR +F ++GT+ D V++ + N + SR
Sbjct: 2 SKSESPKE---PE---QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 55
Query: 402 GFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNK 524
GFGFVT+ + VD + RPH++DG+ +E K+A+ R+D++
Sbjct: 56 GFGFVTYATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,388,171
Number of Sequences: 369166
Number of extensions: 2016534
Number of successful extensions: 7973
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7237
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 12106823640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
