Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_I20
(443 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotei... 35 0.096
sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotei... 35 0.096
sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D 34 0.16
sp|P21519|MAM_DROME Neurogenic protein mastermind 34 0.16
sp|Q08473|SQD_DROME RNA-binding protein squid (Heterogeneou... 33 0.21
sp|P66852|SSB3_STRP1 Single-strand binding protein 3 (SSB 3... 32 0.48
sp|Q8NZJ0|SSB2_STRP8 Single-strand binding protein 2 (SSB 2... 32 0.48
sp|P38114|YB00_YEAST Putative 126.9 kDa transcriptional reg... 32 0.82
sp|P46468|CDAT_PLAF7 Putative cell division cycle ATPase 31 1.1
sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprote... 31 1.1
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1
Length = 346
Score = 34.7 bits (78), Expect = 0.096
Identities = 15/29 (51%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = +1
Query: 4 RPHQLDGQSIEVKKALPRDD-NKSNSKQS 87
RPH +DG++++ K+A+PRDD N+S S S
Sbjct: 84 RPHIIDGKTVDPKRAVPRDDKNRSESNVS 112
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core protein
A1-A) (PEN repeat clone P9)
Length = 365
Score = 34.7 bits (78), Expect = 0.096
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 14/63 (22%)
Frame = +1
Query: 4 RPHQLDGQSIEVKKALPRDDNK--------------SNSKQSNPVGNKSTPKGGYNNNTG 141
+ HQL+G+ ++VKKALP+ +++ ++ + GN GG N N G
Sbjct: 183 KQHQLNGKMVDVKKALPKQNDQQGGGGGRGGPGGRAGGNRGNMGGGNYGNQNGGGNWNNG 242
Query: 142 SNN 150
NN
Sbjct: 243 GNN 245
Score = 32.0 bits (71), Expect = 0.62
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = +1
Query: 1 TRPHQLDGQSIEVKKALPRDD 63
+RPH++DG+ +E K+A+PR D
Sbjct: 91 SRPHKIDGRVVEPKRAVPRQD 111
>sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D
Length = 471
Score = 33.9 bits (76), Expect = 0.16
Identities = 17/44 (38%), Positives = 29/44 (65%)
Frame = +1
Query: 4 RPHQLDGQSIEVKKALPRDDNKSNSKQSNPVGNKSTPKGGYNNN 135
RPH +DG+++E K+ALPR + + S+++N + K GG +N
Sbjct: 93 RPHIIDGKTVEAKRALPRPERE--SRETN-ISVKKLFVGGLKDN 133
>sp|P21519|MAM_DROME Neurogenic protein mastermind
Length = 1594
Score = 33.9 bits (76), Expect = 0.16
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 28 SIEVKKALPRDDNKSNSKQSNPVGNKSTPKGGYNNNTGSN 147
S E LP ++N SNS +N GN + GG +NTG+N
Sbjct: 250 SFEPPHKLPNNNNNSNSNNNN--GNANANNGGNGSNTGNN 287
>sp|Q08473|SQD_DROME RNA-binding protein squid (Heterogeneous nuclear ribonucleoprotein
40) (HNRNP 40)
Length = 344
Score = 33.5 bits (75), Expect = 0.21
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 1 TRPHQLDGQSIEVKKALPRDDNKS-NSKQSNPVGNKSTPKGGYNNNTGSNNRY 156
T ++ G+ ++VK+A P+ +N+ + P G +GGY G NN++
Sbjct: 196 TPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQW 248
>sp|P66852|SSB3_STRP1 Single-strand binding protein 3 (SSB 3) (Helix-destabilizing
protein 3)
sp|Q5XA62|SSB2_STRP6 Single-strand binding protein 2 (SSB 2) (Helix-destabilizing
protein 2)
sp|P66853|SSB_STRP3 Single-strand binding protein (SSB) (Helix-destabilizing protein)
Length = 163
Score = 32.3 bits (72), Expect = 0.48
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 22 GQSIEVKKALPRDDNKSNSKQSNPVGNKSTPKGGYNNNTGSNNRYS 159
GQ + V + + + S+ + G+ + GG+NNNT S+N YS
Sbjct: 87 GQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYS 132
>sp|Q8NZJ0|SSB2_STRP8 Single-strand binding protein 2 (SSB 2) (Helix-destabilizing
protein 2)
Length = 163
Score = 32.3 bits (72), Expect = 0.48
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 22 GQSIEVKKALPRDDNKSNSKQSNPVGNKSTPKGGYNNNTGSNNRYS 159
GQ + V + + + S+ + G+ + GG+NNNT S+N YS
Sbjct: 87 GQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYS 132
>sp|P38114|YB00_YEAST Putative 126.9 kDa transcriptional regulatory protein in YSW1-RIB7
intergenic region
Length = 1094
Score = 31.6 bits (70), Expect = 0.82
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 58 DDNKSNSKQSNPVGNKSTPKGGYNNNTGSNNRYSQDD 168
DDN +N+ +N GN S+ NNN SN+ + +D
Sbjct: 951 DDNNNNNNNNNKNGNNSSSTINNNNNNYSNSNNNDND 987
>sp|P46468|CDAT_PLAF7 Putative cell division cycle ATPase
Length = 1229
Score = 31.2 bits (69), Expect = 1.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 58 DDNKSNSKQSNPVGNKSTPKGGYNNNTGSNNRY 156
D+N +NS +N N ++ NNN G NN Y
Sbjct: 280 DNNSNNSNNNNNNDNNNSNNNNNNNNGGKNNSY 312
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1 protein) (P11
protein)
Length = 385
Score = 31.2 bits (69), Expect = 1.1
Identities = 10/20 (50%), Positives = 18/20 (90%)
Frame = +1
Query: 4 RPHQLDGQSIEVKKALPRDD 63
RPH++DG+++E K+A+PR +
Sbjct: 85 RPHKIDGRTVEPKRAVPRQE 104
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.301 0.121 0.344
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,439,581
Number of Sequences: 369166
Number of extensions: 542252
Number of successful extensions: 1630
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1422
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2344429560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)