Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_C17
(530 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36099|YKD0_YEAST Hypothetical 23.0 kDa protein in IXR1-... 30 3.6
sp|P23637|ERF2_PICPI Eukaryotic peptide chain release facto... 29 6.2
sp|P32896|PDC2_YEAST PDC2 protein 29 8.1
sp|P09798|CDC16_YEAST Anaphase promoting complex subunit CD... 29 8.1
>sp|P36099|YKD0_YEAST Hypothetical 23.0 kDa protein in IXR1-TFA1 intergenic region
Length = 201
Score = 30.0 bits (66), Expect = 3.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 201 LIYCC*TYCYYSFVSILDYNLFRNSYYYSCY 109
L YCC YC+Y + +L + YYY Y
Sbjct: 3 LCYCCCCYCFYYCIIVLLLYYYYYYYYYYYY 33
>sp|P23637|ERF2_PICPI Eukaryotic peptide chain release factor GTP-binding subunit (ERF2)
(Translation release factor 3) (ERF3) (ERF-3)
(Omnipotent suppressor protein 2)
Length = 741
Score = 29.3 bits (64), Expect = 6.2
Identities = 22/90 (24%), Positives = 33/90 (36%)
Frame = +3
Query: 6 NKSTPKGGYNNNTGSNNRYSQDDFXXXXXXXXXXXXXXXXXXXXXXXXXXXSQNYSSNKF 185
N +GGY+NN G N ++ + + NY++N +
Sbjct: 77 NNYNNRGGYSNNRGGYNNSNRGGY---------SNYNSYNTNSNQGGYSNYNNNYANNSY 127
Query: 186 SNNRLSEPFNNENNFSQPTYSNDASYSYGQ 275
+NN NN NN Y+N S GQ
Sbjct: 128 NNN------NNYNNNYNQGYNNYNSQPQGQ 151
>sp|P32896|PDC2_YEAST PDC2 protein
Length = 925
Score = 28.9 bits (63), Expect = 8.1
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 159 SQNYSSNKF--SNNRLSEPFNNENNFSQPTYSNDASYSYGQYDT 284
+ N+S+N +NNR S NN N S ND+S Y Q +T
Sbjct: 528 NSNHSNNAIENTNNRGSNNNNNNNGSSNNINDNDSSVKYLQQNT 571
>sp|P09798|CDC16_YEAST Anaphase promoting complex subunit CDC16 (Cell division control
protein 16)
Length = 840
Score = 28.9 bits (63), Expect = 8.1
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 6 NKSTPKGGYNNNTGSNNRYSQDDF 77
NK+ KGG+++ TGSNN + DDF
Sbjct: 812 NKALRKGGHDSKTGSNN--ADDDF 833
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,869,208
Number of Sequences: 369166
Number of extensions: 763407
Number of successful extensions: 2149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2056
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3600891075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)