Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_K17
(393 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P32896|PDC2_YEAST PDC2 protein 29 3.9
sp|Q03100|CYAA_DICDI Adenylate cyclase, aggregation specifi... 28 5.1
sp|O13863|YDU2_SCHPO Hypothetical protein C1B1.02c in chrom... 28 6.6
sp|Q9VUK5|OR71A_DROME Putative odorant receptor 71a 28 6.6
sp|Q24174|ABRU_DROME Abrupt protein (Clueless protein) 28 6.6
sp|P33005|KALM_CHICK Anosmin-1 precursor (Kallmann syndrome... 28 8.6
sp|Q04671|P_HUMAN P protein (Melanocyte-specific transporte... 28 8.6
sp|Q89AH2|RLUC_BUCBP Ribosomal large subunit pseudouridine ... 28 8.6
>sp|P32896|PDC2_YEAST PDC2 protein
Length = 925
Score = 28.9 bits (63), Expect = 3.9
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 1 SQNYSSNKF--SNNRLSEPFNNENNFSQPTYSNDASYSYGQYDT 126
+ N+S+N +NNR S NN N S ND+S Y Q +T
Sbjct: 528 NSNHSNNAIENTNNRGSNNNNNNNGSSNNINDNDSSVKYLQQNT 571
>sp|Q03100|CYAA_DICDI Adenylate cyclase, aggregation specific (ATP pyrophosphate-lyase)
(Adenylyl cyclase)
Length = 1407
Score = 28.5 bits (62), Expect = 5.1
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 1 SQNYSSNKFSNNRLSEPFNNENNFSQPTYSNDASY 105
+ NY++N ++NN + +NN NN + + +N+ Y
Sbjct: 754 NNNYNNNNYNNNNYNNNYNN-NNLNNNSNNNNNEY 787
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 1 SQNYSSNKFSNNRLSEPFNNENNFSQPTYSNDASYS 108
+ NY++N ++NN + NN +N + Y + +S S
Sbjct: 759 NNNYNNNNYNNNYNNNNLNNNSNNNNNEYGSSSSSS 794
>sp|O13863|YDU2_SCHPO Hypothetical protein C1B1.02c in chromosome I
Length = 537
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 13 SSNKFSNNRLSEPFNNENNFSQPTYSND 96
SSN SN +LSE + E +F++ Y ND
Sbjct: 203 SSNTQSNTQLSEMESEEKSFNKDVYPND 230
>sp|Q9VUK5|OR71A_DROME Putative odorant receptor 71a
Length = 378
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -3
Query: 286 IQFILNMDNFHILQRLPYWALVPPSWDHRPVFDYNHPY 173
I FI+ F I RLP+W P W +F Y Y
Sbjct: 139 IPFIVIQPLFDIPNRLPFWMWTPFDWQQPVLFWYAFIY 176
>sp|Q24174|ABRU_DROME Abrupt protein (Clueless protein)
Length = 904
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 1 SQNYSSNKFSNNRLSEPFNNENNFSQPTYSNDAS 102
S N ++N SNN LS NN NN ++ + N S
Sbjct: 208 SNNNNNNSSSNNSLSNNNNNNNNNAESSNHNKIS 241
>sp|P33005|KALM_CHICK Anosmin-1 precursor (Kallmann syndrome protein homolog)
Length = 675
Score = 27.7 bits (60), Expect = 8.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 223 VPPSWDHRPVFDYNHPYHYR 164
+PP HRP +HP+HY+
Sbjct: 650 LPPFLPHRPHLKQHHPHHYK 669
>sp|Q04671|P_HUMAN P protein (Melanocyte-specific transporter protein) (Pink-eyed
dilution protein homolog)
Length = 838
Score = 27.7 bits (60), Expect = 8.6
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +2
Query: 56 IMKTILANLHILTMLVTVTDNMIHLIPLQVDMVIHLTVVVWV 181
++ LA+LH++ + T +I ++P + ++ + +VVWV
Sbjct: 690 VLMEALAHLHLIEYVGEQTALLIKMVPEEQRLIAAIVLVVWV 731
>sp|Q89AH2|RLUC_BUCBP Ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
Length = 315
Score = 27.7 bits (60), Expect = 8.6
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -3
Query: 334 ETSKYLKMNAKLSVFYIQFILNMDNFHILQRLP 236
+++K +K+N +LS+ + IL DN+ ++ P
Sbjct: 76 DSNKKIKLNTRLSIIFNNMILYEDNYFLILNKP 108
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,561,781
Number of Sequences: 369166
Number of extensions: 625053
Number of successful extensions: 1771
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1711
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)