Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_C08
(251 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9VUK5|OR71A_DROME Putative odorant receptor 71a 28 6.5
sp|P33005|KALM_CHICK Anosmin-1 precursor (Kallmann syndrome... 28 8.5
sp|Q89AH2|RLUC_BUCBP Ribosomal large subunit pseudouridine ... 28 8.5
>sp|Q9VUK5|OR71A_DROME Putative odorant receptor 71a
Length = 378
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -3
Query: 144 IQFILNMDNFHILQRLPYWALVPPSWDHRPVFDYNHPY 31
I FI+ F I RLP+W P W +F Y Y
Sbjct: 139 IPFIVIQPLFDIPNRLPFWMWTPFDWQQPVLFWYAFIY 176
>sp|P33005|KALM_CHICK Anosmin-1 precursor (Kallmann syndrome protein homolog)
Length = 675
Score = 27.7 bits (60), Expect = 8.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 81 VPPSWDHRPVFDYNHPYHYR 22
+PP HRP +HP+HY+
Sbjct: 650 LPPFLPHRPHLKQHHPHHYK 669
>sp|Q89AH2|RLUC_BUCBP Ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
Length = 315
Score = 27.7 bits (60), Expect = 8.5
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -3
Query: 192 ETSKYLKMNAKLSVFYIQFILNMDNFHILQRLP 94
+++K +K+N +LS+ + IL DN+ ++ P
Sbjct: 76 DSNKKIKLNTRLSIIFNNMILYEDNYFLILNKP 108
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,123,349
Number of Sequences: 369166
Number of extensions: 401857
Number of successful extensions: 883
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 68,354,980
effective HSP length: 54
effective length of database: 58,379,290
effective search space used: 1692999410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)