Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_F22
(865 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotei... 134 3e-31
sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotei... 132 1e-30
sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoprotei... 122 1e-27
sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotei... 122 2e-27
sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotei... 122 2e-27
sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotei... 121 3e-27
sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein ... 121 3e-27
sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotei... 120 6e-27
sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoprotei... 120 6e-27
sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoprotei... 120 6e-27
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core protein
A1-A) (PEN repeat clone P9)
Length = 365
Score = 134 bits (338), Expect = 3e-31
Identities = 70/171 (40%), Positives = 105/171 (61%), Gaps = 16/171 (9%)
Frame = +3
Query: 3 GFVTYSDASSVDDAQGNRPHEVDGIKVDSKRAMPKEDT-SPEFHATVNRLFVGRLKRNVV 179
GF+TYS +S +D+AQ +RPH++DG V+ KRA+P++D SP ATV +LFVG LK +
Sbjct: 75 GFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHD 134
Query: 180 ADDLRQYFGEYGTIVDA-VIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEV 356
+R YF +G IVD ++I+ G+ RGF FV F+D D VDK+++ + HQL+G+ ++V
Sbjct: 135 EQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDV 194
Query: 357 KKALPRDDNK--------------SNSKQSNPVGNKSTPKGGYNNNTGSNN 467
KKALP+ +++ ++ + GN GG N N G NN
Sbjct: 195 KKALPKQNDQQGGGGGRGGPGGRAGGNRGNMGGGNYGNQNGGGNWNNGGNN 245
Score = 70.5 bits (171), Expect = 6e-12
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = +3
Query: 114 TSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SRGFGFVTFED 290
T PE + +LF+G L ++L+ +F ++G IVD V++ + + SRGFGF+T+
Sbjct: 25 TEPEH---MRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSH 81
Query: 291 TDSVDKIIVTRPHQLDGQSIEVKKALPRDD 380
+ +D+ +RPH++DG+ +E K+A+PR D
Sbjct: 82 SSMIDEAQKSRPHKIDGRVVEPKRAVPRQD 111
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
Length = 342
Score = 132 bits (333), Expect = 1e-30
Identities = 71/154 (46%), Positives = 96/154 (62%), Gaps = 2/154 (1%)
Frame = +3
Query: 3 GFVTYSDASSVDDAQGNRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVV 179
GF+TYS A VDDAQ RPH+VDG V+ KRA+P+ + PE ATV +LFVG +K +
Sbjct: 61 GFITYSRAHMVDDAQNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEME 120
Query: 180 ADDLRQYFGEYGTIVDA-VIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEV 356
+DLR YF +YGT+V A ++++ + RGF FV F+D D VDKI ++R HQ+ G+ I+V
Sbjct: 121 ENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHIDV 180
Query: 357 KKALPRDDNKSNSKQSNPVGNKSTPKGGYNNNTG 458
KKALP+ D P G +GG G
Sbjct: 181 KKALPKGD--------APGGRGGGGRGGVGGGAG 206
Score = 68.2 bits (165), Expect = 3e-11
Identities = 32/82 (39%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +3
Query: 138 VNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SRGFGFVTFEDTDSVDKII 314
V +LF+G L + L+Q+F ++G IVD V++ + + SRGFGF+T+ VD
Sbjct: 16 VRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQ 75
Query: 315 VTRPHQLDGQSIEVKKALPRDD 380
RPH++DG+ +E K+A+PR +
Sbjct: 76 NARPHKVDGRVVEPKRAVPRTE 97
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP A1)
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1)
Length = 365
Score = 122 bits (306), Expect = 1e-27
Identities = 68/164 (41%), Positives = 98/164 (59%), Gaps = 2/164 (1%)
Frame = +3
Query: 3 GFVTYSDASSVDDAQGNRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVV 179
GFVTY VD A RPH+VDG V+ KRA+ +ED+S P H TV ++FVG +K +
Sbjct: 58 GFVTYLSTDEVDAAMTARPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTE 117
Query: 180 ADDLRQYFGEYGTI-VDAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEV 356
D LR+YF +YG I V ++ + +G+ RGF FVTFED DSVDKI++ + H ++ + +V
Sbjct: 118 EDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQV 177
Query: 357 KKALPRDDNKSNSKQSNPVGNKSTPKGGYNNNTGSNNRYSQDDF 488
+KAL + + S V +GG + N GS + D+F
Sbjct: 178 RKALSKQEMAS-------VSGSQRERGG-SGNYGSRGGFGNDNF 213
Score = 78.2 bits (191), Expect = 3e-14
Identities = 35/90 (38%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Frame = +3
Query: 117 SPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SRGFGFVTFEDT 293
+P + +LF+G L + LR++F ++GT+ D V++ + N + SRGFGFVT+ T
Sbjct: 6 APNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLST 65
Query: 294 DSVDKIIVTRPHQLDGQSIEVKKALPRDDN 383
D VD + RPH++DG+ +E K+A+ R+D+
Sbjct: 66 DEVDAAMTARPHKVDGRVVEPKRAVSREDS 95
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed)
Length = 320
Score = 122 bits (305), Expect = 2e-27
Identities = 64/161 (39%), Positives = 93/161 (57%), Gaps = 2/161 (1%)
Frame = +3
Query: 3 GFVTYSDASSVDDAQGNRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVV 179
GFVTY+ VD A RPH+VDG V+ KRA+ +ED+ P H TV ++FVG +K +
Sbjct: 58 GFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTE 117
Query: 180 ADDLRQYFGEYGTI-VDAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEV 356
LR YF +YG I V ++ + +G+ RGF FVTF+D DSVDKI++ + H ++G + EV
Sbjct: 118 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEV 177
Query: 357 KKALPRDDNKSNSKQSNPVGNKSTPKGGYNNNTGSNNRYSQ 479
+KAL + + S S GG G N+ + +
Sbjct: 178 RKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGR 218
Score = 74.7 bits (182), Expect = 3e-13
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +3
Query: 87 SKRAMPKEDTSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SR 263
SK PKE PE + +LF+G L + LR +F ++GT+ D V++ + N + SR
Sbjct: 2 SKSESPKE---PE---QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 55
Query: 264 GFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNK 386
GFGFVT+ + VD + RPH++DG+ +E K+A+ R+D++
Sbjct: 56 GFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1)
Length = 372
Score = 122 bits (305), Expect = 2e-27
Identities = 64/161 (39%), Positives = 93/161 (57%), Gaps = 2/161 (1%)
Frame = +3
Query: 3 GFVTYSDASSVDDAQGNRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVV 179
GFVTY+ VD A RPH+VDG V+ KRA+ +ED+ P H TV ++FVG +K +
Sbjct: 58 GFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTE 117
Query: 180 ADDLRQYFGEYGTI-VDAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEV 356
LR YF +YG I V ++ + +G+ RGF FVTF+D DSVDKI++ + H ++G + EV
Sbjct: 118 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEV 177
Query: 357 KKALPRDDNKSNSKQSNPVGNKSTPKGGYNNNTGSNNRYSQ 479
+KAL + + S S GG G N+ + +
Sbjct: 178 RKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGR 218
Score = 74.7 bits (182), Expect = 3e-13
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +3
Query: 87 SKRAMPKEDTSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SR 263
SK PKE PE + +LF+G L + LR +F ++GT+ D V++ + N + SR
Sbjct: 2 SKSESPKE---PE---QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 55
Query: 264 GFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNK 386
GFGFVT+ + VD + RPH++DG+ +E K+A+ R+D++
Sbjct: 56 GFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 (hnRNP A2(B))
Length = 358
Score = 121 bits (303), Expect = 3e-27
Identities = 68/169 (40%), Positives = 98/169 (57%), Gaps = 7/169 (4%)
Frame = +3
Query: 3 GFVTYSDASSVDDAQGNRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVV 179
GFVT+S + VD A RPH +DG V+ KRA+ +E+++ P H TV +LFVG +K +
Sbjct: 53 GFVTFSCMNEVDAAMSARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTE 112
Query: 180 ADDLRQYFGEYGTIVDAVIINNS-NGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEV 356
LR+YF EYG I II + +G+ RGFGFVTF D D VDKI++ + H ++G + EV
Sbjct: 113 EHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEV 172
Query: 357 KKALPRDD-----NKSNSKQSNPVGNKSTPKGGYNNNTGSNNRYSQDDF 488
+KAL + + N N++ N S G + + G N R D +
Sbjct: 173 RKALSKQEMQDVQNTRNNRGGNFGFGDSRGGGNFGSGPGGNFRGGSDGY 221
Score = 66.2 bits (160), Expect = 1e-10
Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Frame = +3
Query: 144 RLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINN-SNGESRGFGFVTFEDTDSVDKIIVT 320
+LF+G L + LR ++ ++G + D V++ + ++ SRGFGFVTF + VD +
Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69
Query: 321 RPHQLDGQSIEVKKALPRDDNKSNSKQSNPVGNKSTPKGGYNNNT 455
RPH +DG+ +E K+A+ R++ ++K V K GG +T
Sbjct: 70 RPHTIDGRVVEPKRAVAREE---SAKPGAHVTVKKLFVGGIKEDT 111
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1) (HDP)
Length = 320
Score = 121 bits (303), Expect = 3e-27
Identities = 64/161 (39%), Positives = 93/161 (57%), Gaps = 2/161 (1%)
Frame = +3
Query: 3 GFVTYSDASSVDDAQGNRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVV 179
GFVTY+ VD A RPH+VDG V+ KRA+ +ED+ P H TV ++FVG +K +
Sbjct: 58 GFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTE 117
Query: 180 ADDLRQYFGEYGTI-VDAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEV 356
LR YF +YG I V ++ + +G+ RGF FVTF+D DSVDKI++ + H ++G + EV
Sbjct: 118 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEV 177
Query: 357 KKALPRDDNKSNSKQSNPVGNKSTPKGGYNNNTGSNNRYSQ 479
+KAL + + S S GG G N+ + +
Sbjct: 178 RKALCKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGR 218
Score = 74.7 bits (182), Expect = 3e-13
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +3
Query: 87 SKRAMPKEDTSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SR 263
SK PKE PE + +LF+G L + LR +F ++GT+ D V++ + N + SR
Sbjct: 2 SKSESPKE---PE---QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 55
Query: 264 GFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNK 386
GFGFVT+ + VD + RPH++DG+ +E K+A+ R+D++
Sbjct: 56 GFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1)
Length = 320
Score = 120 bits (300), Expect = 6e-27
Identities = 63/161 (39%), Positives = 93/161 (57%), Gaps = 2/161 (1%)
Frame = +3
Query: 3 GFVTYSDASSVDDAQGNRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVV 179
GFVTY+ VD A RPH+VDG V+ KRA+ +ED+ P H TV ++FVG +K +
Sbjct: 58 GFVTYATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTE 117
Query: 180 ADDLRQYFGEYGTI-VDAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEV 356
LR YF +YG I V ++ + +G+ RGF FVTF+D +SVDKI++ + H ++G + EV
Sbjct: 118 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEV 177
Query: 357 KKALPRDDNKSNSKQSNPVGNKSTPKGGYNNNTGSNNRYSQ 479
+KAL + + S S GG G N+ + +
Sbjct: 178 RKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGR 218
Score = 74.7 bits (182), Expect = 3e-13
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +3
Query: 87 SKRAMPKEDTSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SR 263
SK PKE PE + +LF+G L + LR +F ++GT+ D V++ + N + SR
Sbjct: 2 SKSESPKE---PE---QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 55
Query: 264 GFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNK 386
GFGFVT+ + VD + RPH++DG+ +E K+A+ R+D++
Sbjct: 56 GFGFVTYATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 / hnRNP
B1)
Length = 353
Score = 120 bits (300), Expect = 6e-27
Identities = 71/170 (41%), Positives = 99/170 (58%), Gaps = 8/170 (4%)
Frame = +3
Query: 3 GFVTYSDASSVDDAQGNRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVV 179
GFVT+S + VD A RPH +DG V+ KRA+ +E++ P H TV +LFVG +K +
Sbjct: 65 GFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTE 124
Query: 180 ADDLRQYFGEYGTI-VDAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEV 356
LR YF EYG I +I + +G+ RGFGFVTF+D D VDKI++ + H ++G + EV
Sbjct: 125 EHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEV 184
Query: 357 KKALPRDD-NKSNSKQSNPVGN--KSTPKGGYNN---NTGSNNRYSQDDF 488
+KAL R + + S +S GN +GG N GSN R D +
Sbjct: 185 RKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGY 234
Score = 68.6 bits (166), Expect = 2e-11
Identities = 30/81 (37%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +3
Query: 144 RLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINN-SNGESRGFGFVTFEDTDSVDKIIVT 320
+LF+G L + LR Y+ ++G + D V++ + ++ SRGFGFVTF VD +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 321 RPHQLDGQSIEVKKALPRDDN 383
RPH +DG+ +E K+A+ R+++
Sbjct: 82 RPHSIDGRVVEPKRAVAREES 102
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 / hnRNP
B1)
Length = 341
Score = 120 bits (300), Expect = 6e-27
Identities = 71/170 (41%), Positives = 99/170 (58%), Gaps = 8/170 (4%)
Frame = +3
Query: 3 GFVTYSDASSVDDAQGNRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVV 179
GFVT+S + VD A RPH +DG V+ KRA+ +E++ P H TV +LFVG +K +
Sbjct: 53 GFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTE 112
Query: 180 ADDLRQYFGEYGTI-VDAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEV 356
LR YF EYG I +I + +G+ RGFGFVTF+D D VDKI++ + H ++G + EV
Sbjct: 113 EHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEV 172
Query: 357 KKALPRDD-NKSNSKQSNPVGN--KSTPKGGYNN---NTGSNNRYSQDDF 488
+KAL R + + S +S GN +GG N GSN R D +
Sbjct: 173 RKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGY 222
Score = 68.6 bits (166), Expect = 2e-11
Identities = 30/81 (37%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +3
Query: 144 RLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINN-SNGESRGFGFVTFEDTDSVDKIIVT 320
+LF+G L + LR Y+ ++G + D V++ + ++ SRGFGFVTF VD +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 321 RPHQLDGQSIEVKKALPRDDN 383
RPH +DG+ +E K+A+ R+++
Sbjct: 70 RPHSIDGRVVEPKRAVAREES 90
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,204,540
Number of Sequences: 369166
Number of extensions: 1474673
Number of successful extensions: 5809
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5262
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8582957970
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)