Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_L13
(809 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotei... 209 9e-54
sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotei... 198 1e-50
sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotei... 190 3e-48
sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotei... 189 1e-47
sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoprotei... 187 2e-47
sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoprotei... 187 3e-47
sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotei... 186 5e-47
sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoprotei... 186 9e-47
sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein ... 186 9e-47
sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotei... 184 2e-46
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core protein
A1-A) (PEN repeat clone P9)
Length = 365
Score = 209 bits (531), Expect = 9e-54
Identities = 119/309 (38%), Positives = 170/309 (55%), Gaps = 53/309 (17%)
Frame = +1
Query: 1 KLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQGN 180
KLFIGGL +TT+E+LK + +WG IVDVVVM+DP+T +SRGFGF+TYS +S +D+AQ +
Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91
Query: 181 RPHEVDGIKVDSKRAMPKED-TSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDA 357
RPH++DG V+ KRA+P++D SP ATV +LFVG LK + +R YF +G IVD
Sbjct: 92 RPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDI 151
Query: 358 -VIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNK------- 513
++I+ G+ RGF FV F+D D VDK+++ + HQL+G+ ++VKKALP+ +++
Sbjct: 152 NIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQNDQQGGGGGR 211
Query: 514 ----------------SNSKQSNPVGNKSTPKGGYNNNTGSNNRYSQDDF---SSSYGNY 636
N N GN + + NN G N+ + + F G Y
Sbjct: 212 GGPGGRAGGNRGNMGGGNYGNQNGGGNWNNGGNNWGNNRGGNDNWGNNSFGGGGGGGGGY 271
Query: 637 PSANNSYHNRN-------------YGTNYNQ------GYSQNY------SSNKFSNNRLS 741
NNS+ N N G N+N GY QNY F+NNR+
Sbjct: 272 GGGNNSWGNNNPWDNGNGGGNFGGGGNNWNNGGNDFGGYQQNYGGGPQRGGGNFNNNRM- 330
Query: 742 EPFNNENNF 768
+P+ F
Sbjct: 331 QPYQGGGGF 339
Score = 70.5 bits (171), Expect = 5e-12
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = +1
Query: 241 TSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SRGFGFVTFED 417
T PE + +LF+G L ++L+ +F ++G IVD V++ + + SRGFGF+T+
Sbjct: 25 TEPEH---MRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSH 81
Query: 418 TDSVDKIIVTRPHQLDGQSIEVKKALPRDD 507
+ +D+ +RPH++DG+ +E K+A+PR D
Sbjct: 82 SSMIDEAQKSRPHKIDGRVVEPKRAVPRQD 111
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
Length = 342
Score = 198 bits (504), Expect = 1e-50
Identities = 105/212 (49%), Positives = 138/212 (65%), Gaps = 2/212 (0%)
Frame = +1
Query: 1 KLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQGN 180
KLFIGGL +TT+ESLK + QWGEIVDVVVM+DP+T +SRGFGF+TYS A VDDAQ
Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNA 77
Query: 181 RPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVD- 354
RPH+VDG V+ KRA+P+ + PE ATV +LFVG +K + +DLR YF +YGT+V
Sbjct: 78 RPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSA 137
Query: 355 AVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNKSNSKQSN 534
A++++ + RGF FV F+D D VDKI ++R HQ+ G+ I+VKKALP+ D
Sbjct: 138 AIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHIDVKKALPKGD--------A 189
Query: 535 PVGNKSTPKGGYNNNTGSNNRYSQDDFSSSYG 630
P G +GG G + D+ S G
Sbjct: 190 PGGRGGGGRGGVGGGAGGGWGGGRGDWGGSAG 221
Score = 68.2 bits (165), Expect = 3e-11
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +1
Query: 265 VNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINN-SNGESRGFGFVTFEDTDSVDKII 441
V +LF+G L + L+Q+F ++G IVD V++ + SRGFGF+T+ VD
Sbjct: 16 VRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQ 75
Query: 442 VTRPHQLDGQSIEVKKALPRDD 507
RPH++DG+ +E K+A+PR +
Sbjct: 76 NARPHKVDGRVVEPKRAVPRTE 97
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 (hnRNP A2(B))
Length = 358
Score = 190 bits (483), Expect = 3e-48
Identities = 108/249 (43%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Frame = +1
Query: 1 KLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQGN 180
KLFIGGL +TTEESL+ FY QWG++ D VVMRDP + +SRGFGFVT+S + VD A
Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69
Query: 181 RPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDA 357
RPH +DG V+ KRA+ +E+++ P H TV +LFVG +K + LR+YF EYG I
Sbjct: 70 RPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIEST 129
Query: 358 -VIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDD-----NKSN 519
+I + +G+ RGFGFVTF D D VDKI++ + H ++G + EV+KAL + + N N
Sbjct: 130 EIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQDVQNTRN 189
Query: 520 SKQSNPVGNKSTPKGGYNNNTGSNNRYSQDDFSSSYGNYPSANNSYHNRNYGTNYNQGYS 699
++ N S G + + G N R D + G Y N Y GT ++
Sbjct: 190 NRGGNFGFGDSRGGGNFGSGPGGNFRGGSDGYGGGRG-YGDGYNGYGGGQGGTYLDE--K 246
Query: 700 QN-YSSNKF 723
QN YSS F
Sbjct: 247 QNLYSSGNF 255
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 (hnRNP A2(A))
Length = 346
Score = 189 bits (479), Expect = 1e-47
Identities = 102/240 (42%), Positives = 141/240 (58%), Gaps = 7/240 (2%)
Frame = +1
Query: 1 KLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQGN 180
KLFIGGL +TTEESL+ +Y QWG + D VVMRDP + +SRGFGFVT+S + VD A
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69
Query: 181 RPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVD- 354
RPH +DG V+ KRA+ +E+++ P H TV +LFVG +K + LR+YF EYG I
Sbjct: 70 RPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSI 129
Query: 355 AVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDD-----NKSN 519
+I + +G+ RGF FVTF+D D VDKI++ + H ++G + EV+KAL + + N N
Sbjct: 130 EIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQDVQNTRN 189
Query: 520 SKQSNPVGNKSTPKGGYNNNTGSNNRYSQDDFSSSYGNYPSANNSYHNRNYGTNYNQGYS 699
++ N S G + + G N R D + G + N Y G NY G S
Sbjct: 190 NRGGNFGFGDSRGGGNFGSGPGGNFRGGSDGYGGGRGYGDNGYNGYGGGQGGGNYGGGPS 249
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 / hnRNP
B1)
Length = 341
Score = 187 bits (476), Expect = 2e-47
Identities = 116/288 (40%), Positives = 156/288 (54%), Gaps = 30/288 (10%)
Frame = +1
Query: 1 KLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQGN 180
KLFIGGL +TTEESL+ +Y QWG++ D VVMRDP + +SRGFGFVT+S + VD A
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 181 RPHEVDGIKVDSKRAMPKEDT-SPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-VD 354
RPH +DG V+ KRA+ +E++ P H TV +LFVG +K + LR YF EYG I
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
Query: 355 AVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDD-NKSNSKQS 531
+I + +G+ RGFGFVTF+D D VDKI++ + H ++G + EV+KAL R + + S +S
Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 189
Query: 532 NPVGN--KSTPKGGYNN---NTGSNNRYSQDDFSS---------SYGNYPSANNSYHNRN 669
GN +GG N GSN R D + S YG P N +
Sbjct: 190 GRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPG 249
Query: 670 YG-------------TNYNQGYSQNYSSNKFSNNRLSEPFNNENNFSQ 774
YG N GY Y N N S +N+ N++Q
Sbjct: 250 YGGGRGGYGGGGPGYGNQGGGYGGGY-DNYGGGNYGSGTYNDFGNYNQ 296
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 / hnRNP
B1)
Length = 353
Score = 187 bits (475), Expect = 3e-47
Identities = 116/288 (40%), Positives = 156/288 (54%), Gaps = 30/288 (10%)
Frame = +1
Query: 1 KLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQGN 180
KLFIGGL +TTEESL+ +Y QWG++ D VVMRDP + +SRGFGFVT+S + VD A
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 181 RPHEVDGIKVDSKRAMPKEDT-SPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-VD 354
RPH +DG V+ KRA+ +E++ P H TV +LFVG +K + LR YF EYG I
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 355 AVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDD-NKSNSKQS 531
+I + +G+ RGFGFVTF+D D VDKI++ + H ++G + EV+KAL R + + S +S
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 201
Query: 532 NPVGN--KSTPKGGYNN---NTGSNNRYSQDDFSS---------SYGNYPSANNSYHNRN 669
GN +GG N GSN R D + S YG P N +
Sbjct: 202 GRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPG 261
Query: 670 YG-------------TNYNQGYSQNYSSNKFSNNRLSEPFNNENNFSQ 774
YG N GY Y N N S +N+ N++Q
Sbjct: 262 YGGGRGGYGGGGPGYGNQGGGYGGGY-DNYGGGNYGSGNYNDFGNYNQ 308
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed)
Length = 320
Score = 186 bits (473), Expect = 5e-47
Identities = 104/259 (40%), Positives = 144/259 (55%), Gaps = 2/259 (0%)
Frame = +1
Query: 1 KLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQGN 180
KLFIGGL +TT+ESL+ + QWG + D VVMRDP T +SRGFGFVTY+ VD A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 181 RPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-VD 354
RPH+VDG V+ KRA+ +ED+ P H TV ++FVG +K + LR YF +YG I V
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 355 AVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNKSNSKQSN 534
++ + +G+ RGF FVTF+D DSVDKI++ + H ++G + EV+KAL + + S S
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQR 194
Query: 535 PVGNKSTPKGGYNNNTGSNNRYSQDDFSSSYGNYPSANNSYHNRNYGTNYNQGYSQNYSS 714
GG G N+ + + S G + + G YN G+ + S+
Sbjct: 195 GRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYN-GFGNDGSN 253
Query: 715 NKFSNNRLSEPFNNENNFS 771
F F N NN S
Sbjct: 254 --FGGGGSYNDFGNYNNQS 270
Score = 74.7 bits (182), Expect = 3e-13
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +1
Query: 214 SKRAMPKEDTSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SR 390
SK PKE PE + +LF+G L + LR +F ++GT+ D V++ + N + SR
Sbjct: 2 SKSESPKE---PE---QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 55
Query: 391 GFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNK 513
GFGFVT+ + VD + RPH++DG+ +E K+A+ R+D++
Sbjct: 56 GFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP A1)
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1)
Length = 365
Score = 186 bits (471), Expect = 9e-47
Identities = 102/239 (42%), Positives = 142/239 (59%), Gaps = 5/239 (2%)
Frame = +1
Query: 1 KLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQGN 180
KLFIGGL +TT+ESL+ + QWG + D VVMRDP + +SRGFGFVTY VD A
Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74
Query: 181 RPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-VD 354
RPH+VDG V+ KRA+ +ED+S P H TV ++FVG +K + D LR+YF +YG I V
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVI 134
Query: 355 AVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNKSNSKQSN 534
++ + +G+ RGF FVTFED DSVDKI++ + H ++ + +V+KAL + + S
Sbjct: 135 EIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQVRKALSKQEMAS------ 188
Query: 535 PVGNKSTPKGGYNNNTGSNNRYSQDDFSSSYGNY---PSANNSYHNRNYGTNYNQGYSQ 702
V +GG + N GS + D+F GN+ + NR YG + G Q
Sbjct: 189 -VSGSQRERGG-SGNYGSRGGFGNDNFGGRGGNFGGNRGGGGGFGNRGYGGDGYNGDGQ 245
Score = 78.2 bits (191), Expect = 3e-14
Identities = 35/90 (38%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Frame = +1
Query: 244 SPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SRGFGFVTFEDT 420
+P + +LF+G L + LR++F ++GT+ D V++ + N + SRGFGFVT+ T
Sbjct: 6 APNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLST 65
Query: 421 DSVDKIIVTRPHQLDGQSIEVKKALPRDDN 510
D VD + RPH++DG+ +E K+A+ R+D+
Sbjct: 66 DEVDAAMTARPHKVDGRVVEPKRAVSREDS 95
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1) (HDP)
Length = 320
Score = 186 bits (471), Expect = 9e-47
Identities = 104/259 (40%), Positives = 144/259 (55%), Gaps = 2/259 (0%)
Frame = +1
Query: 1 KLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQGN 180
KLFIGGL +TT+ESL+ + QWG + D VVMRDP T +SRGFGFVTY+ VD A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 181 RPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-VD 354
RPH+VDG V+ KRA+ +ED+ P H TV ++FVG +K + LR YF +YG I V
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 355 AVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNKSNSKQSN 534
++ + +G+ RGF FVTF+D DSVDKI++ + H ++G + EV+KAL + + S S
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQEMASASSSQR 194
Query: 535 PVGNKSTPKGGYNNNTGSNNRYSQDDFSSSYGNYPSANNSYHNRNYGTNYNQGYSQNYSS 714
GG G N+ + + S G + + G YN G+ + S+
Sbjct: 195 GRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYN-GFGNDGSN 253
Query: 715 NKFSNNRLSEPFNNENNFS 771
F F N NN S
Sbjct: 254 --FGGGGSYNDFGNYNNQS 270
Score = 74.7 bits (182), Expect = 3e-13
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +1
Query: 214 SKRAMPKEDTSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SR 390
SK PKE PE + +LF+G L + LR +F ++GT+ D V++ + N + SR
Sbjct: 2 SKSESPKE---PE---QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 55
Query: 391 GFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNK 513
GFGFVT+ + VD + RPH++DG+ +E K+A+ R+D++
Sbjct: 56 GFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1)
Length = 320
Score = 184 bits (468), Expect = 2e-46
Identities = 103/259 (39%), Positives = 144/259 (55%), Gaps = 2/259 (0%)
Frame = +1
Query: 1 KLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQGN 180
KLFIGGL +TT+ESL+ + QWG + D VVMRDP T +SRGFGFVTY+ VD A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA 74
Query: 181 RPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-VD 354
RPH+VDG V+ KRA+ +ED+ P H TV ++FVG +K + LR YF +YG I V
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 355 AVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNKSNSKQSN 534
++ + +G+ RGF FVTF+D +SVDKI++ + H ++G + EV+KAL + + S S
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQR 194
Query: 535 PVGNKSTPKGGYNNNTGSNNRYSQDDFSSSYGNYPSANNSYHNRNYGTNYNQGYSQNYSS 714
GG G N+ + + S G + + G YN G+ + S+
Sbjct: 195 GRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYN-GFGNDGSN 253
Query: 715 NKFSNNRLSEPFNNENNFS 771
F F N NN S
Sbjct: 254 --FGGGGSYNDFGNYNNQS 270
Score = 74.7 bits (182), Expect = 3e-13
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +1
Query: 214 SKRAMPKEDTSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SR 390
SK PKE PE + +LF+G L + LR +F ++GT+ D V++ + N + SR
Sbjct: 2 SKSESPKE---PE---QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 55
Query: 391 GFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNK 513
GFGFVT+ + VD + RPH++DG+ +E K+A+ R+D++
Sbjct: 56 GFGFVTYATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.310 0.129 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,593,179
Number of Sequences: 369166
Number of extensions: 1598140
Number of successful extensions: 9057
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6534
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7715018400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)