Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_A19
(806 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotei... 197 4e-50
sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotei... 195 1e-49
sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotei... 184 3e-46
sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoprotei... 181 2e-45
sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoprotei... 181 2e-45
sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotei... 180 5e-45
sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotei... 180 5e-45
sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotei... 180 5e-45
sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein ... 179 8e-45
sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotei... 178 2e-44
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
Length = 342
Score = 197 bits (500), Expect = 4e-50
Identities = 102/198 (51%), Positives = 134/198 (67%), Gaps = 2/198 (1%)
Frame = +2
Query: 8 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 187
+KLFIGGL +TT+ESLK + QWGEIVDVVVM+DP+T +SRGFGF+TYS A VDDAQ
Sbjct: 17 RKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQN 76
Query: 188 NRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVD 364
RPH+VDG V+ KRA+P+ + PE ATV +LFVG +K + +DLR YF +YGT+V
Sbjct: 77 ARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVS 136
Query: 365 -AVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNKSNSKQS 541
A++++ + RGF FV F+D D VDKI ++R HQ+ G+ I+VKKALP+ D
Sbjct: 137 AAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHIDVKKALPKGD-------- 188
Query: 542 NPVGNKSTPKGGYNNNTG 595
P G +GG G
Sbjct: 189 APGGRGGGGRGGVGGGAG 206
Score = 68.2 bits (165), Expect = 3e-11
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +2
Query: 275 VNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINN-SNGESRGFGFVTFEDTDSVDKII 451
V +LF+G L + L+Q+F ++G IVD V++ + SRGFGF+T+ VD
Sbjct: 16 VRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQ 75
Query: 452 VTRPHQLDGQSIEVKKALPRDD 517
RPH++DG+ +E K+A+PR +
Sbjct: 76 NARPHKVDGRVVEPKRAVPRTE 97
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core protein
A1-A) (PEN repeat clone P9)
Length = 365
Score = 195 bits (495), Expect = 1e-49
Identities = 98/215 (45%), Positives = 142/215 (66%), Gaps = 16/215 (7%)
Frame = +2
Query: 8 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 187
+KLFIGGL +TT+E+LK + +WG IVDVVVM+DP+T +SRGFGF+TYS +S +D+AQ
Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK 90
Query: 188 NRPHEVDGIKVDSKRAMPKED-TSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVD 364
+RPH++DG V+ KRA+P++D SP ATV +LFVG LK + +R YF +G IVD
Sbjct: 91 SRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVD 150
Query: 365 A-VIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNK------ 523
++I+ G+ RGF FV F+D D VDK+++ + HQL+G+ ++VKKALP+ +++
Sbjct: 151 INIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQNDQQGGGGG 210
Query: 524 --------SNSKQSNPVGNKSTPKGGYNNNTGSNN 604
++ + GN GG N N G NN
Sbjct: 211 RGGPGGRAGGNRGNMGGGNYGNQNGGGNWNNGGNN 245
Score = 70.5 bits (171), Expect = 5e-12
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = +2
Query: 251 TSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SRGFGFVTFED 427
T PE + +LF+G L ++L+ +F ++G IVD V++ + + SRGFGF+T+
Sbjct: 25 TEPEH---MRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSH 81
Query: 428 TDSVDKIIVTRPHQLDGQSIEVKKALPRDD 517
+ +D+ +RPH++DG+ +E K+A+PR D
Sbjct: 82 SSMIDEAQKSRPHKIDGRVVEPKRAVPRQD 111
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 (hnRNP A2(B))
Length = 358
Score = 184 bits (466), Expect = 3e-46
Identities = 96/213 (45%), Positives = 134/213 (62%), Gaps = 7/213 (3%)
Frame = +2
Query: 8 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 187
+KLFIGGL +TTEESL+ FY QWG++ D VVMRDP + +SRGFGFVT+S + VD A
Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68
Query: 188 NRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVD 364
RPH +DG V+ KRA+ +E+++ P H TV +LFVG +K + LR+YF EYG I
Sbjct: 69 ARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIES 128
Query: 365 A-VIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDD-----NKS 526
+I + +G+ RGFGFVTF D D VDKI++ + H ++G + EV+KAL + + N
Sbjct: 129 TEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQDVQNTR 188
Query: 527 NSKQSNPVGNKSTPKGGYNNNTGSNNRYSQDDF 625
N++ N S G + + G N R D +
Sbjct: 189 NNRGGNFGFGDSRGGGNFGSGPGGNFRGGSDGY 221
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 / hnRNP
B1)
Length = 353
Score = 181 bits (459), Expect = 2e-45
Identities = 99/214 (46%), Positives = 135/214 (63%), Gaps = 8/214 (3%)
Frame = +2
Query: 8 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 187
+KLFIGGL +TTEESL+ +Y QWG++ D VVMRDP + +SRGFGFVT+S + VD A
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 188 NRPHEVDGIKVDSKRAMPKEDT-SPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-V 361
RPH +DG V+ KRA+ +E++ P H TV +LFVG +K + LR YF EYG I
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 140
Query: 362 DAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDD-NKSNSKQ 538
+I + +G+ RGFGFVTF+D D VDKI++ + H ++G + EV+KAL R + + S +
Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSR 200
Query: 539 SNPVGN--KSTPKGGYNN---NTGSNNRYSQDDF 625
S GN +GG N GSN R D +
Sbjct: 201 SGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGY 234
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 / hnRNP
B1)
Length = 341
Score = 181 bits (459), Expect = 2e-45
Identities = 99/214 (46%), Positives = 135/214 (63%), Gaps = 8/214 (3%)
Frame = +2
Query: 8 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 187
+KLFIGGL +TTEESL+ +Y QWG++ D VVMRDP + +SRGFGFVT+S + VD A
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 188 NRPHEVDGIKVDSKRAMPKEDT-SPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-V 361
RPH +DG V+ KRA+ +E++ P H TV +LFVG +K + LR YF EYG I
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 128
Query: 362 DAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDD-NKSNSKQ 538
+I + +G+ RGFGFVTF+D D VDKI++ + H ++G + EV+KAL R + + S +
Sbjct: 129 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSR 188
Query: 539 SNPVGN--KSTPKGGYNN---NTGSNNRYSQDDF 625
S GN +GG N GSN R D +
Sbjct: 189 SGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGY 222
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 (hnRNP A2(A))
Length = 346
Score = 180 bits (456), Expect = 5e-45
Identities = 94/213 (44%), Positives = 133/213 (62%), Gaps = 7/213 (3%)
Frame = +2
Query: 8 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 187
+KLFIGGL +TTEESL+ +Y QWG + D VVMRDP + +SRGFGFVT+S + VD A
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMA 68
Query: 188 NRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVD 364
RPH +DG V+ KRA+ +E+++ P H TV +LFVG +K + LR+YF EYG I
Sbjct: 69 TRPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDS 128
Query: 365 -AVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDD-----NKS 526
+I + +G+ RGF FVTF+D D VDKI++ + H ++G + EV+KAL + + N
Sbjct: 129 IEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQDVQNTR 188
Query: 527 NSKQSNPVGNKSTPKGGYNNNTGSNNRYSQDDF 625
N++ N S G + + G N R D +
Sbjct: 189 NNRGGNFGFGDSRGGGNFGSGPGGNFRGGSDGY 221
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed)
Length = 320
Score = 180 bits (456), Expect = 5e-45
Identities = 91/205 (44%), Positives = 127/205 (61%), Gaps = 2/205 (0%)
Frame = +2
Query: 8 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 187
+KLFIGGL +TT+ESL+ + QWG + D VVMRDP T +SRGFGFVTY+ VD A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 188 NRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-V 361
RPH+VDG V+ KRA+ +ED+ P H TV ++FVG +K + LR YF +YG I V
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 362 DAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNKSNSKQS 541
++ + +G+ RGF FVTF+D DSVDKI++ + H ++G + EV+KAL + + S S
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQ 193
Query: 542 NPVGNKSTPKGGYNNNTGSNNRYSQ 616
GG G N+ + +
Sbjct: 194 RGRSGSGNFGGGRGGGFGGNDNFGR 218
Score = 74.7 bits (182), Expect = 3e-13
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +2
Query: 224 SKRAMPKEDTSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SR 400
SK PKE PE + +LF+G L + LR +F ++GT+ D V++ + N + SR
Sbjct: 2 SKSESPKE---PE---QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 55
Query: 401 GFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNK 523
GFGFVT+ + VD + RPH++DG+ +E K+A+ R+D++
Sbjct: 56 GFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1)
Length = 372
Score = 180 bits (456), Expect = 5e-45
Identities = 91/205 (44%), Positives = 127/205 (61%), Gaps = 2/205 (0%)
Frame = +2
Query: 8 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 187
+KLFIGGL +TT+ESL+ + QWG + D VVMRDP T +SRGFGFVTY+ VD A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 188 NRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-V 361
RPH+VDG V+ KRA+ +ED+ P H TV ++FVG +K + LR YF +YG I V
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 362 DAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNKSNSKQS 541
++ + +G+ RGF FVTF+D DSVDKI++ + H ++G + EV+KAL + + S S
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQ 193
Query: 542 NPVGNKSTPKGGYNNNTGSNNRYSQ 616
GG G N+ + +
Sbjct: 194 RGRSGSGNFGGGRGGGFGGNDNFGR 218
Score = 74.7 bits (182), Expect = 3e-13
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +2
Query: 224 SKRAMPKEDTSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SR 400
SK PKE PE + +LF+G L + LR +F ++GT+ D V++ + N + SR
Sbjct: 2 SKSESPKE---PE---QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 55
Query: 401 GFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNK 523
GFGFVT+ + VD + RPH++DG+ +E K+A+ R+D++
Sbjct: 56 GFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1) (HDP)
Length = 320
Score = 179 bits (454), Expect = 8e-45
Identities = 91/205 (44%), Positives = 127/205 (61%), Gaps = 2/205 (0%)
Frame = +2
Query: 8 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 187
+KLFIGGL +TT+ESL+ + QWG + D VVMRDP T +SRGFGFVTY+ VD A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 188 NRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-V 361
RPH+VDG V+ KRA+ +ED+ P H TV ++FVG +K + LR YF +YG I V
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 362 DAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNKSNSKQS 541
++ + +G+ RGF FVTF+D DSVDKI++ + H ++G + EV+KAL + + S S
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQEMASASSSQ 193
Query: 542 NPVGNKSTPKGGYNNNTGSNNRYSQ 616
GG G N+ + +
Sbjct: 194 RGRSGSGNFGGGRGGGFGGNDNFGR 218
Score = 74.7 bits (182), Expect = 3e-13
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +2
Query: 224 SKRAMPKEDTSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SR 400
SK PKE PE + +LF+G L + LR +F ++GT+ D V++ + N + SR
Sbjct: 2 SKSESPKE---PE---QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 55
Query: 401 GFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNK 523
GFGFVT+ + VD + RPH++DG+ +E K+A+ R+D++
Sbjct: 56 GFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1)
Length = 320
Score = 178 bits (451), Expect = 2e-44
Identities = 90/205 (43%), Positives = 127/205 (61%), Gaps = 2/205 (0%)
Frame = +2
Query: 8 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 187
+KLFIGGL +TT+ESL+ + QWG + D VVMRDP T +SRGFGFVTY+ VD A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 73
Query: 188 NRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-V 361
RPH+VDG V+ KRA+ +ED+ P H TV ++FVG +K + LR YF +YG I V
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 362 DAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNKSNSKQS 541
++ + +G+ RGF FVTF+D +SVDKI++ + H ++G + EV+KAL + + S S
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQ 193
Query: 542 NPVGNKSTPKGGYNNNTGSNNRYSQ 616
GG G N+ + +
Sbjct: 194 RGRSGSGNFGGGRGGGFGGNDNFGR 218
Score = 74.7 bits (182), Expect = 3e-13
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +2
Query: 224 SKRAMPKEDTSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SR 400
SK PKE PE + +LF+G L + LR +F ++GT+ D V++ + N + SR
Sbjct: 2 SKSESPKE---PE---QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 55
Query: 401 GFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNK 523
GFGFVT+ + VD + RPH++DG+ +E K+A+ R+D++
Sbjct: 56 GFGFVTYATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,721,762
Number of Sequences: 369166
Number of extensions: 1440525
Number of successful extensions: 6640
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5930
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7666799535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)