Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_L01
(746 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotei... 207 2e-53
sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotei... 199 7e-51
sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotei... 191 1e-48
sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotei... 190 4e-48
sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoprotei... 187 3e-47
sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoprotei... 187 3e-47
sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoprotei... 187 3e-47
sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotei... 185 1e-46
sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein ... 184 2e-46
sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotei... 184 2e-46
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core protein
A1-A) (PEN repeat clone P9)
Length = 365
Score = 207 bits (528), Expect = 2e-53
Identities = 117/299 (39%), Positives = 166/299 (55%), Gaps = 53/299 (17%)
Frame = +3
Query: 9 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 188
+KLFIGGL +TT+E+LK + +WG IVDVVVM+DP+T +SRGFGF+TYS +S +D+AQ
Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK 90
Query: 189 NRPHEVDGIKVDSKRAMPKED-TSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVD 365
+RPH++DG V+ KRA+P++D SP ATV +LFVG LK + +R YF +G IVD
Sbjct: 91 SRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVD 150
Query: 366 A-VIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNK------ 524
++I+ G+ RGF FV F+D D VDK+++ + HQL+G+ ++VKKALP+ +++
Sbjct: 151 INIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQNDQQGGGGG 210
Query: 525 -----------------SNSKQSNPVGNKSTPKGGYNNNTGSNNRYSQDDF---SSSYGN 644
N N GN + + NN G N+ + + F G
Sbjct: 211 RGGPGGRAGGNRGNMGGGNYGNQNGGGNWNNGGNNWGNNRGGNDNWGNNSFGGGGGGGGG 270
Query: 645 YPSANNSYDNRN-------------YGTNYNQ------GYSQNY------SSNKFSNNR 746
Y NNS+ N N G N+N GY QNY F+NNR
Sbjct: 271 YGGGNNSWGNNNPWDNGNGGGNFGGGGNNWNNGGNDFGGYQQNYGGGPQRGGGNFNNNR 329
Score = 70.5 bits (171), Expect = 5e-12
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = +3
Query: 252 TSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SRGFGFVTFED 428
T PE + +LF+G L ++L+ +F ++G IVD V++ + + SRGFGF+T+
Sbjct: 25 TEPEH---MRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSH 81
Query: 429 TDSVDKIIVTRPHQLDGQSIEVKKALPRDD 518
+ +D+ +RPH++DG+ +E K+A+PR D
Sbjct: 82 SSMIDEAQKSRPHKIDGRVVEPKRAVPRQD 111
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
Length = 342
Score = 199 bits (506), Expect = 7e-51
Identities = 105/213 (49%), Positives = 139/213 (65%), Gaps = 2/213 (0%)
Frame = +3
Query: 9 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 188
+KLFIGGL +TT+ESLK + QWGEIVDVVVM+DP+T +SRGFGF+TYS A VDDAQ
Sbjct: 17 RKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQN 76
Query: 189 NRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVD 365
RPH+VDG V+ KRA+P+ + PE ATV +LFVG +K + +DLR YF +YGT+V
Sbjct: 77 ARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVS 136
Query: 366 -AVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNKSNSKQS 542
A++++ + RGF FV F+D D VDKI ++R HQ+ G+ I+VKKALP+ D
Sbjct: 137 AAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHIDVKKALPKGD-------- 188
Query: 543 NPVGNKSTPKGGYNNNTGSNNRYSQDDFSSSYG 641
P G +GG G + D+ S G
Sbjct: 189 APGGRGGGGRGGVGGGAGGGWGGGRGDWGGSAG 221
Score = 68.2 bits (165), Expect = 2e-11
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +3
Query: 276 VNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINN-SNGESRGFGFVTFEDTDSVDKII 452
V +LF+G L + L+Q+F ++G IVD V++ + SRGFGF+T+ VD
Sbjct: 16 VRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQ 75
Query: 453 VTRPHQLDGQSIEVKKALPRDD 518
RPH++DG+ +E K+A+PR +
Sbjct: 76 NARPHKVDGRVVEPKRAVPRTE 97
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 (hnRNP A2(B))
Length = 358
Score = 191 bits (486), Expect = 1e-48
Identities = 108/250 (43%), Positives = 148/250 (59%), Gaps = 8/250 (3%)
Frame = +3
Query: 9 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 188
+KLFIGGL +TTEESL+ FY QWG++ D VVMRDP + +SRGFGFVT+S + VD A
Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68
Query: 189 NRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVD 365
RPH +DG V+ KRA+ +E+++ P H TV +LFVG +K + LR+YF EYG I
Sbjct: 69 ARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIES 128
Query: 366 A-VIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDD-----NKS 527
+I + +G+ RGFGFVTF D D VDKI++ + H ++G + EV+KAL + + N
Sbjct: 129 TEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQDVQNTR 188
Query: 528 NSKQSNPVGNKSTPKGGYNNNTGSNNRYSQDDFSSSYGNYPSANNSYDNRNYGTNYNQGY 707
N++ N S G + + G N R D + G Y N Y GT ++
Sbjct: 189 NNRGGNFGFGDSRGGGNFGSGPGGNFRGGSDGYGGGRG-YGDGYNGYGGGQGGTYLDE-- 245
Query: 708 SQN-YSSNKF 734
QN YSS F
Sbjct: 246 KQNLYSSGNF 255
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 (hnRNP A2(A))
Length = 346
Score = 190 bits (482), Expect = 4e-48
Identities = 102/241 (42%), Positives = 142/241 (58%), Gaps = 7/241 (2%)
Frame = +3
Query: 9 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 188
+KLFIGGL +TTEESL+ +Y QWG + D VVMRDP + +SRGFGFVT+S + VD A
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMA 68
Query: 189 NRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVD 365
RPH +DG V+ KRA+ +E+++ P H TV +LFVG +K + LR+YF EYG I
Sbjct: 69 TRPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDS 128
Query: 366 -AVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDD-----NKS 527
+I + +G+ RGF FVTF+D D VDKI++ + H ++G + EV+KAL + + N
Sbjct: 129 IEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQDVQNTR 188
Query: 528 NSKQSNPVGNKSTPKGGYNNNTGSNNRYSQDDFSSSYGNYPSANNSYDNRNYGTNYNQGY 707
N++ N S G + + G N R D + G + N Y G NY G
Sbjct: 189 NNRGGNFGFGDSRGGGNFGSGPGGNFRGGSDGYGGGRGYGDNGYNGYGGGQGGGNYGGGP 248
Query: 708 S 710
S
Sbjct: 249 S 249
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 / hnRNP
B1)
Length = 353
Score = 187 bits (474), Expect = 3e-47
Identities = 108/249 (43%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Frame = +3
Query: 9 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 188
+KLFIGGL +TTEESL+ +Y QWG++ D VVMRDP + +SRGFGFVT+S + VD A
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 189 NRPHEVDGIKVDSKRAMPKEDT-SPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-V 362
RPH +DG V+ KRA+ +E++ P H TV +LFVG +K + LR YF EYG I
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 140
Query: 363 DAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDD-NKSNSKQ 539
+I + +G+ RGFGFVTF+D D VDKI++ + H ++G + EV+KAL R + + S +
Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSR 200
Query: 540 SNPVGN--KSTPKGGYNN---NTGSNNRYSQDDFSSSYGNYPSANNSYDNRNYGTNYNQG 704
S GN +GG N GSN R D + S G + N Y G N+ G
Sbjct: 201 SGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRG-FGDGYNGYGGGPGGGNF--G 257
Query: 705 YSQNYSSNK 731
S Y +
Sbjct: 258 GSPGYGGGR 266
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP A1)
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1)
Length = 365
Score = 187 bits (474), Expect = 3e-47
Identities = 102/240 (42%), Positives = 143/240 (59%), Gaps = 5/240 (2%)
Frame = +3
Query: 9 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 188
+KLFIGGL +TT+ESL+ + QWG + D VVMRDP + +SRGFGFVTY VD A
Sbjct: 14 RKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMT 73
Query: 189 NRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-V 362
RPH+VDG V+ KRA+ +ED+S P H TV ++FVG +K + D LR+YF +YG I V
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEV 133
Query: 363 DAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNKSNSKQS 542
++ + +G+ RGF FVTFED DSVDKI++ + H ++ + +V+KAL + + S
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQVRKALSKQEMAS----- 188
Query: 543 NPVGNKSTPKGGYNNNTGSNNRYSQDDFSSSYGNY---PSANNSYDNRNYGTNYNQGYSQ 713
V +GG + N GS + D+F GN+ + NR YG + G Q
Sbjct: 189 --VSGSQRERGG-SGNYGSRGGFGNDNFGGRGGNFGGNRGGGGGFGNRGYGGDGYNGDGQ 245
Score = 78.2 bits (191), Expect = 2e-14
Identities = 35/90 (38%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Frame = +3
Query: 255 SPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SRGFGFVTFEDT 431
+P + +LF+G L + LR++F ++GT+ D V++ + N + SRGFGFVT+ T
Sbjct: 6 APNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLST 65
Query: 432 DSVDKIIVTRPHQLDGQSIEVKKALPRDDN 521
D VD + RPH++DG+ +E K+A+ R+D+
Sbjct: 66 DEVDAAMTARPHKVDGRVVEPKRAVSREDS 95
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 / hnRNP
B1)
Length = 341
Score = 187 bits (474), Expect = 3e-47
Identities = 108/249 (43%), Positives = 147/249 (59%), Gaps = 8/249 (3%)
Frame = +3
Query: 9 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 188
+KLFIGGL +TTEESL+ +Y QWG++ D VVMRDP + +SRGFGFVT+S + VD A
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 189 NRPHEVDGIKVDSKRAMPKEDT-SPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-V 362
RPH +DG V+ KRA+ +E++ P H TV +LFVG +K + LR YF EYG I
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 128
Query: 363 DAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDD-NKSNSKQ 539
+I + +G+ RGFGFVTF+D D VDKI++ + H ++G + EV+KAL R + + S +
Sbjct: 129 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSR 188
Query: 540 SNPVGN--KSTPKGGYNN---NTGSNNRYSQDDFSSSYGNYPSANNSYDNRNYGTNYNQG 704
S GN +GG N GSN R D + S G + N Y G N+ G
Sbjct: 189 SGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRG-FGDGYNGYGGGPGGGNF--G 245
Query: 705 YSQNYSSNK 731
S Y +
Sbjct: 246 GSPGYGGGR 254
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed)
Length = 320
Score = 185 bits (469), Expect = 1e-46
Identities = 103/252 (40%), Positives = 145/252 (57%), Gaps = 12/252 (4%)
Frame = +3
Query: 9 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 188
+KLFIGGL +TT+ESL+ + QWG + D VVMRDP T +SRGFGFVTY+ VD A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 189 NRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-V 362
RPH+VDG V+ KRA+ +ED+ P H TV ++FVG +K + LR YF +YG I V
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 363 DAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNKSNSKQS 542
++ + +G+ RGF FVTF+D DSVDKI++ + H ++G + EV+KAL + + S S
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQ 193
Query: 543 NPVGNKSTPKGGYNNNTGSNNRYSQ-DDFSS--------SYGNYPSANNSYDN-RNYGTN 692
GG G N+ + + +FS G Y + + Y+ N G+N
Sbjct: 194 RGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSN 253
Query: 693 YNQGYSQNYSSN 728
+ G S N N
Sbjct: 254 FGGGGSYNDFGN 265
Score = 74.7 bits (182), Expect = 2e-13
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +3
Query: 225 SKRAMPKEDTSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SR 401
SK PKE PE + +LF+G L + LR +F ++GT+ D V++ + N + SR
Sbjct: 2 SKSESPKE---PE---QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 55
Query: 402 GFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNK 524
GFGFVT+ + VD + RPH++DG+ +E K+A+ R+D++
Sbjct: 56 GFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1) (HDP)
Length = 320
Score = 184 bits (467), Expect = 2e-46
Identities = 103/252 (40%), Positives = 145/252 (57%), Gaps = 12/252 (4%)
Frame = +3
Query: 9 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 188
+KLFIGGL +TT+ESL+ + QWG + D VVMRDP T +SRGFGFVTY+ VD A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 189 NRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-V 362
RPH+VDG V+ KRA+ +ED+ P H TV ++FVG +K + LR YF +YG I V
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 363 DAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNKSNSKQS 542
++ + +G+ RGF FVTF+D DSVDKI++ + H ++G + EV+KAL + + S S
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQEMASASSSQ 193
Query: 543 NPVGNKSTPKGGYNNNTGSNNRYSQ-DDFSS--------SYGNYPSANNSYDN-RNYGTN 692
GG G N+ + + +FS G Y + + Y+ N G+N
Sbjct: 194 RGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSN 253
Query: 693 YNQGYSQNYSSN 728
+ G S N N
Sbjct: 254 FGGGGSYNDFGN 265
Score = 74.7 bits (182), Expect = 2e-13
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +3
Query: 225 SKRAMPKEDTSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SR 401
SK PKE PE + +LF+G L + LR +F ++GT+ D V++ + N + SR
Sbjct: 2 SKSESPKE---PE---QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 55
Query: 402 GFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNK 524
GFGFVT+ + VD + RPH++DG+ +E K+A+ R+D++
Sbjct: 56 GFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1)
Length = 372
Score = 184 bits (467), Expect = 2e-46
Identities = 96/232 (41%), Positives = 134/232 (57%), Gaps = 2/232 (0%)
Frame = +3
Query: 9 KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 188
+KLFIGGL +TT+ESL+ + QWG + D VVMRDP T +SRGFGFVTY+ VD A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 189 NRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTI-V 362
RPH+VDG V+ KRA+ +ED+ P H TV ++FVG +K + LR YF +YG I V
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 363 DAVIINNSNGESRGFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNKSNSKQS 542
++ + +G+ RGF FVTF+D DSVDKI++ + H ++G + EV+KAL + + S S
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQ 193
Query: 543 NPVGNKSTPKGGYNNNTGSNNRYSQDDFSSSYGNYPSANNSYDNRNYGTNYN 698
GG G N+ + + S G + + G YN
Sbjct: 194 RGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYN 245
Score = 74.7 bits (182), Expect = 2e-13
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +3
Query: 225 SKRAMPKEDTSPEFHATVNRLFVGRLKRNVVADDLRQYFGEYGTIVDAVIINNSNGE-SR 401
SK PKE PE + +LF+G L + LR +F ++GT+ D V++ + N + SR
Sbjct: 2 SKSESPKE---PE---QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 55
Query: 402 GFGFVTFEDTDSVDKIIVTRPHQLDGQSIEVKKALPRDDNK 524
GFGFVT+ + VD + RPH++DG+ +E K+A+ R+D++
Sbjct: 56 GFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,278,786
Number of Sequences: 369166
Number of extensions: 1538120
Number of successful extensions: 9508
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7575
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6776504000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)