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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00310
         (719 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P33761|DPO3B_BORBU  DNA polymerase III, beta chain              30   5.0  
sp|P18571|VS11_ROTGA  Nonstructural protein                        30   5.0  

>sp|P33761|DPO3B_BORBU DNA polymerase III, beta chain
          Length = 385

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 150 NYQDDKAFLERYLKKESTVSKPSIKDRIARLN 245
           NY D K+ + +  K +S VS   +KDR+AR+N
Sbjct: 256 NYPDYKSIIPKEQKNKSLVSLGILKDRLARVN 287

>sp|P18571|VS11_ROTGA Nonstructural protein
          Length = 170

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +3

Query: 39  SKMNVDGVRKWLDNQIMIGNGKDAQLINNEFC----INRPRNYQDDKAFLERYLKKESTV 206
           S+ N       L  + M+    DA+  N EF     ++RP +   DK++ E   K +   
Sbjct: 52  SRSNYSDAYDKLKREPMVEESNDAKYRNFEFSEDEEVHRPSSKASDKSYREMKRKHDDIN 111

Query: 207 SKPSIKDRIARLN 245
           +  SI ++++ LN
Sbjct: 112 TSDSILEKLSELN 124

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,066,422
Number of Sequences: 369166
Number of extensions: 1313722
Number of successful extensions: 2322
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2322
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6413660220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_026_B19
2. Dr_sW_008_F12
3. Dr_sW_022_H22
4. Dr_sW_024_N17
5. Dr_sW_013_I18
6. Dr_sW_010_B06
7. Dr_sW_021_A05
8. Dr_sW_002_A03
9. Dr_sW_028_I22
10. Dr_sW_007_K24
11. Dr_sW_007_E12
12. Dr_sW_021_K23
13. Dr_sW_014_G19
14. Dr_sW_015_P05
15. Dr_sW_013_D07
16. Dr_sW_003_F01
17. Dr_sW_025_K01
18. Dr_sW_009_D05
19. Dr_sW_019_L18
20. Dr_sW_015_G02
21. Dr_sW_020_P15
22. Dr_sW_004_N06
23. Dr_sW_026_I22
24. Dr_sW_022_C16
25. Dr_sW_026_K23
26. Dr_sW_018_J16
27. Dr_sW_015_G16
28. Dr_sW_015_D12
29. Dr_sW_002_D09
30. Dr_sW_018_E16
31. Dr_sW_012_I21
32. Dr_sW_007_G16
33. Dr_sW_002_G16
34. Dr_sW_014_B20