Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_E16
(389 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P06275|DPOL_WHV8 P protein [Includes: DNA-directed DNA p... 28 4.9
sp|P12898|DPOL_WHV7 P protein [Includes: DNA-directed DNA p... 28 4.9
sp|P47382|SYK_MYCGE Lysyl-tRNA synthetase (Lysine--tRNA lig... 28 6.4
sp|Q9HCL0|PCD18_HUMAN Protocadherin 18 precursor 28 8.4
>sp|P06275|DPOL_WHV8 P protein [Includes: DNA-directed DNA polymerase ; RNA-directed DNA
polymerase ; Ribonuclease H ]
Length = 883
Score = 28.5 bits (62), Expect = 4.9
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 239 KFDSC*FPLTVNRNNTNHETSHKLSCAVQVKLSNKVLLDSYDNKM 105
+F++C T NRNN+ +T H L C V S +L +Y K+
Sbjct: 496 RFNTCLSSSTHNRNNSQLQTMHNL-CTRHVYSSLLLLFKTYGRKL 539
>sp|P12898|DPOL_WHV7 P protein [Includes: DNA-directed DNA polymerase ; RNA-directed DNA
polymerase ; Ribonuclease H ]
Length = 884
Score = 28.5 bits (62), Expect = 4.9
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 239 KFDSC*FPLTVNRNNTNHETSHKLSCAVQVKLSNKVLLDSYDNKM 105
+F++C T NRNN+ +T H L C V S +L +Y K+
Sbjct: 497 RFNTCLSSSTHNRNNSQLQTMHNL-CTRHVYSSLLLLFKTYGRKL 540
>sp|P47382|SYK_MYCGE Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 490
Score = 28.1 bits (61), Expect = 6.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 2 VGQDQSAVLSGK*DERIQISSHESRMQS*IELFSPFYCRNYLIE 133
V DQSA+L + ++++ H+ Q I LF +C LIE
Sbjct: 329 VKDDQSAILLAE-KHHVKLAKHQQNKQHIINLFFEQFCEQTLIE 371
>sp|Q9HCL0|PCD18_HUMAN Protocadherin 18 precursor
Length = 1128
Score = 27.7 bits (60), Expect = 8.4
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 3 LARISPPCSVVNEMN--VFKFQVMNHE--CSRELSCSVHFIVVTI**NFIR*FHLD 158
+ R + P VVNE N + ++ E C + L+CS+ F V+T+ ++ FH++
Sbjct: 62 MQRGNSPLLVVNEDNGEISIGATIDREQLCQKNLNCSIEFDVITLPTEHLQLFHIE 117
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,580,069
Number of Sequences: 369166
Number of extensions: 646884
Number of successful extensions: 926
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1670473860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)