Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_A03
(523 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P39016|MPT5_YEAST Suppressor protein MPT5 (HTR1 protein) 30 4.6
sp|Q12142|ATG9_YEAST Autophagy-related protein 9 (Cytoplasm... 29 6.0
>sp|P39016|MPT5_YEAST Suppressor protein MPT5 (HTR1 protein)
Length = 834
Score = 29.6 bits (65), Expect = 4.6
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Frame = -3
Query: 485 ITKILKESLLDIPIIGISQDQSA---VISVLNEMN----IFKSQVKFDSC*FPLTVN--- 336
I + E +D+ I G SQ+ ++ V++++N++N I K KF F ++
Sbjct: 281 IDTVDNEVQIDLIIKGFSQEFTSIEQVVTLINDLNGNHVIQKCIFKFSPSKFGFIIDAIV 340
Query: 335 -RNNTNHETSHKLSCAVQVKLFNKVLLDSLDNKMDRTTQFMTAFV 204
+NN ++HK C V KL + L + + QF+ +
Sbjct: 341 EQNNIITISTHKHGCCVLQKLLSVCTLQQIFKISVKIVQFLPGLI 385
>sp|Q12142|ATG9_YEAST Autophagy-related protein 9 (Cytoplasm to vacuole targeting protein
7)
Length = 997
Score = 29.3 bits (64), Expect = 6.0
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +2
Query: 302 IYDWFRGSCYFC*QLEEINNCRILLEI*ICSSHLGH 409
+Y+++ G+ ++C LE+I N LL + S+++GH
Sbjct: 310 VYNYYLGNGFYCIILEKILNICTLLFVVFVSTYMGH 345
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,482,699
Number of Sequences: 369166
Number of extensions: 968758
Number of successful extensions: 1769
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1769
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)