Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_B20
(696 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P33761|DPO3B_BORBU DNA polymerase III, beta chain 30 4.7
sp|P18571|VS11_ROTGA Nonstructural protein 30 4.7
>sp|P33761|DPO3B_BORBU DNA polymerase III, beta chain
Length = 385
Score = 30.4 bits (67), Expect = 4.7
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 128 NYQDDKAFLERYLKKESTVSKPSIKDRIARLN 223
NY D K+ + + K +S VS +KDR+AR+N
Sbjct: 256 NYPDYKSIIPKEQKNKSLVSLGILKDRLARVN 287
>sp|P18571|VS11_ROTGA Nonstructural protein
Length = 170
Score = 30.4 bits (67), Expect = 4.7
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +2
Query: 17 SKMNVDGVRKWLDNQIMIGNGKDAQLINNEFC----INRPRNYQDDKAFLERYLKKESTV 184
S+ N L + M+ DA+ N EF ++RP + DK++ E K +
Sbjct: 52 SRSNYSDAYDKLKREPMVEESNDAKYRNFEFSEDEEVHRPSSKASDKSYREMKRKHDDIN 111
Query: 185 SKPSIKDRIARLN 223
+ SI ++++ LN
Sbjct: 112 TSDSILEKLSELN 124
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,768,564
Number of Sequences: 369166
Number of extensions: 1353203
Number of successful extensions: 2535
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2535
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6024953540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)