Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_G16
(301 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P39016|MPT5_YEAST Suppressor protein MPT5 (HTR1 protein) 30 2.2
sp|P22456|ACHAA_XENLA Acetylcholine receptor protein, alpha... 28 6.4
>sp|P39016|MPT5_YEAST Suppressor protein MPT5 (HTR1 protein)
Length = 834
Score = 29.6 bits (65), Expect = 2.2
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
Frame = -2
Query: 258 ITKILKESLLDILIIGISQDQSA---VISVPNEMN--------IFKFQVKFDSC*FPLTV 112
I + E +D++I G SQ+ ++ V+++ N++N IFKF V
Sbjct: 281 IDTVDNEVQIDLIIKGFSQEFTSIEQVVTLINDLNGNHVIQKCIFKFSPSKFGFIIDAIV 340
Query: 111 NRNNTNHETSHKSSCAVQVKLFN 43
+NN ++HK C V KL +
Sbjct: 341 EQNNIITISTHKHGCCVLQKLLS 363
>sp|P22456|ACHAA_XENLA Acetylcholine receptor protein, alpha-1-A subunit precursor
Length = 457
Score = 28.1 bits (61), Expect = 6.4
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +1
Query: 91 VIRVISVNS*RKLTTVEFYLK--FEYVHLIWD-TDHGGL 198
+I++I+VN ++ T LK +E VHL WD D+GG+
Sbjct: 57 LIQLINVNEVNQIVTTNVRLKQQWEDVHLKWDPEDYGGI 95
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,092,680
Number of Sequences: 369166
Number of extensions: 525325
Number of successful extensions: 906
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1668247950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)