Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_K24
(589 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P33761|DPO3B_BORBU DNA polymerase III, beta chain 30 3.4
sp|P47382|SYK_MYCGE Lysyl-tRNA synthetase (Lysine--tRNA lig... 29 7.6
sp|P41001|TOP2_PLAFK DNA topoisomerase 2 (DNA topoisomerase... 29 9.9
>sp|P33761|DPO3B_BORBU DNA polymerase III, beta chain
Length = 385
Score = 30.4 bits (67), Expect = 3.4
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 29 NYQDDKAFLERYLKKESTVSKPSIKDRIARLN 124
NY D K+ + + K +S VS +KDR+AR+N
Sbjct: 256 NYPDYKSIIPKEQKNKSLVSLGILKDRLARVN 287
>sp|P47382|SYK_MYCGE Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 490
Score = 29.3 bits (64), Expect = 7.6
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 197 NWVGQDQSAVLSGK*DERIQISSHESRMQS*IELFSPFYCRNYLIE 334
N V DQSA+L + ++++ H+ Q I LF +C LIE
Sbjct: 327 NSVKDDQSAILLAE-KHHVKLAKHQQNKQHIINLFFEQFCEQTLIE 371
>sp|P41001|TOP2_PLAFK DNA topoisomerase 2 (DNA topoisomerase II)
Length = 1398
Score = 28.9 bits (63), Expect = 9.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 5 EFCINRPRNYQDDKAFLERYLKKESTVSKPSIKDRIARLNN 127
EFC R + Y++ K++L L+KE + K +A +NN
Sbjct: 1043 EFCYQRLKAYENRKSYLISKLEKEKRIISNKTKFILAIVNN 1083
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,085,653
Number of Sequences: 369166
Number of extensions: 963578
Number of successful extensions: 1508
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4406202450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)