Planarian EST Database

Dr_sW_022_H22

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_022_H22
         (703 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41001|TOP2_PLAFK  DNA topoisomerase 2 (DNA topoisomerase...    30   6.2  

>sp|P41001|TOP2_PLAFK DNA topoisomerase 2 (DNA topoisomerase II)
          Length = 1398

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 107  INNEFCINRPRNYQDDKAFLERYLKKESTVSKPSIKVRIARLNN 238
            I  EFC  R + Y++ K++L   L+KE  +     K  +A +NN
Sbjct: 1040 ILKEFCYQRLKAYENRKSYLISKLEKEKRIISNKTKFILAIVNN 1083

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,807,553
Number of Sequences: 369166
Number of extensions: 1372312
Number of successful extensions: 2556
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2556
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6122130210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)