Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_C16
(674 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41001|TOP2_PLAFK DNA topoisomerase 2 (DNA topoisomerase... 30 5.8
sp|Q12142|ATG9_YEAST Autophagy-related protein 9 (Cytoplasm... 29 9.8
>sp|P41001|TOP2_PLAFK DNA topoisomerase 2 (DNA topoisomerase II)
Length = 1398
Score = 30.0 bits (66), Expect = 5.8
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 84 INNEFCINRPRNYQDDKAFLERYLKKESTVSKPSIKVRIARLNN 215
I EFC R + Y++ K++L L+KE + K +A +NN
Sbjct: 1040 ILKEFCYQRLKAYENRKSYLISKLEKEKRIISNKTKFILAIVNN 1083
>sp|Q12142|ATG9_YEAST Autophagy-related protein 9 (Cytoplasm to vacuole targeting protein
7)
Length = 997
Score = 29.3 bits (64), Expect = 9.8
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +3
Query: 459 IYDWFRGSCYFC*QLEEINNCRILLEI*ICSSHLGH 566
+Y+++ G+ ++C LE+I N LL + S+++GH
Sbjct: 310 VYNYYLGNGFYCIILEKILNICTLLFVVFVSTYMGH 345
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,102,979
Number of Sequences: 369166
Number of extensions: 1246419
Number of successful extensions: 2227
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2227
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5684835195
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)