Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_N17
(702 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P33761|DPO3B_BORBU DNA polymerase III, beta chain 30 4.7
sp|P18571|VS11_ROTGA Nonstructural protein 30 4.7
sp|P39016|MPT5_YEAST Suppressor protein MPT5 (HTR1 protein) 30 8.1
>sp|P33761|DPO3B_BORBU DNA polymerase III, beta chain
Length = 385
Score = 30.4 bits (67), Expect = 4.7
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 139 NYQDDKAFLERYLKKESTVSKPSIKDRIARLN 234
NY D K+ + + K +S VS +KDR+AR+N
Sbjct: 256 NYPDYKSIIPKEQKNKSLVSLGILKDRLARVN 287
>sp|P18571|VS11_ROTGA Nonstructural protein
Length = 170
Score = 30.4 bits (67), Expect = 4.7
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +1
Query: 28 SKMNVDGVRKWLDNQIMIGNGKDAQLINNEFC----INRPRNYQDDKAFLERYLKKESTV 195
S+ N L + M+ DA+ N EF ++RP + DK++ E K +
Sbjct: 52 SRSNYSDAYDKLKREPMVEESNDAKYRNFEFSEDEEVHRPSSKASDKSYREMKRKHDDIN 111
Query: 196 SKPSIKDRIARLN 234
+ SI ++++ LN
Sbjct: 112 TSDSILEKLSELN 124
>sp|P39016|MPT5_YEAST Suppressor protein MPT5 (HTR1 protein)
Length = 834
Score = 29.6 bits (65), Expect = 8.1
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
Frame = -3
Query: 664 ITKILKESLLDIPIIGISQDQSA---VISVLNEMN--------IFKFQVKFDSC*FPLTV 518
I + E +D+ I G SQ+ ++ V++++N++N IFKF V
Sbjct: 281 IDTVDNEVQIDLIIKGFSQEFTSIEQVVTLINDLNGNHVIQKCIFKFSPSKFGFIIDAIV 340
Query: 517 NRNNTNHETSHKSSCAVQVKLFN 449
+NN ++HK C V KL +
Sbjct: 341 EQNNIITISTHKHGCCVLQKLLS 363
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,801,256
Number of Sequences: 369166
Number of extensions: 1372580
Number of successful extensions: 2622
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2622
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6122130210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)