Planarian EST Database

DrC_01087

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_01087 ATTCGGCACGAGGATTTTCTTTCTAATTGCTGTTTGTATTTCTCAAATAGTTTGTAAAAC ATTAAAATCTGAAGAAACTAAGGATGTAATTACATCTTTTGAACAAATTGATAACGTCCT GAATGAAGAAGTTAAAGCGAGAATGTGGACCAGATGTGCCGATGGACAATTTCGTTTGTG CTATGGTAGCGTGTGCTATATCTGCTCATACACATTTTGGTCTTACTGGAGTAGAACTTG TGAACCTCGAGACTTCAAATGTTGGCGATAAGTTAACATGTTCTATTGTATCGTTATCAA TCATGTCGATAAAGTTTTAAATGTTTACATTTTCAATGAAATCTTTTTGTTAATCTAAAT AAATTATTATATCATTGTTCACAATAAAAA

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01087
         (390 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8D2H4|LPXB_WIGBR  Lipid-A-disaccharide synthase                32   0.34 
sp|Q86WR7|CJ047_HUMAN  Protein C10orf47                            31   0.99 
sp|O80948|MB23_ARATH  Myrosinase binding protein-like At2g39330    28   4.9  
sp|P00723|BGAL_KLULA  Beta-galactosidase (Lactase)                 28   6.4  
sp|Q9UW81|NOP1_NEUCR  Opsin-1 (NR)                                 28   6.4  
sp|P30543|AA2AR_RAT  Adenosine A2a receptor                        28   8.4

>sp|Q8D2H4|LPXB_WIGBR Lipid-A-disaccharide synthase
          Length = 385

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
 Frame = +3

Query: 66  NLKKLRM*LHLLNKLITS*MKKLKRECGPDVPM---DNFVCAMVACA 197
           N+  L++ + ++N L+    +++KRE  PD+P+   DNF   ++AC+
Sbjct: 220 NIFNLKILVPMVNSLLKKRFEEIKREVAPDLPITIFDNFSYEVMACS 266

>sp|Q86WR7|CJ047_HUMAN Protein C10orf47
          Length = 435

 Score = 30.8 bits (68), Expect = 0.99
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 68  SEETKDVITSFEQIDNVLNEEVKARMWTRCADGQFRLCYGSVCYICSYTFWSYWSRTCEP 247
           + E KDV+  FE+  + L+E+ +  +          LC G VC +CS +     S   EP
Sbjct: 55  THEEKDVLLFFEETIDSLDEDFEEPV----------LCDGGVCCLCSPSLEESTSSPSEP 104

Query: 248 RD 253
            D
Sbjct: 105 ED 106

>sp|O80948|MB23_ARATH Myrosinase binding protein-like At2g39330
          Length = 459

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 10/24 (41%), Positives = 20/24 (83%)
 Frame = -1

Query: 147 HILALTSSFRTLSICSKDVITSLV 76
           HI+A+  ++R +++C+ +VIT+LV
Sbjct: 76  HIIAVEGNYRGVALCATEVITNLV 99

>sp|P00723|BGAL_KLULA Beta-galactosidase (Lactase)
          Length = 1025

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 206 SYTFWSYWSRTCEPRDFKCWR*VNM 280
           S TFW   +   EPRDFK W+  N+
Sbjct: 785 SITFWRPPTNNDEPRDFKNWKKYNI 809

>sp|Q9UW81|NOP1_NEUCR Opsin-1 (NR)
          Length = 304

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 194 TRYHSTNEIVHRHIWSTFSL*LLHSG 117
           T Y +  E  HR +W TF+L +L SG
Sbjct: 34  TEYQTLGETGHRTLWVTFALMVLSSG 59

>sp|P30543|AA2AR_RAT Adenosine A2a receptor
          Length = 410

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 26/106 (24%), Positives = 43/106 (40%)
 Frame = +2

Query: 11  RIFFLIAVCISQIVCKTLKSEETKDVITSFEQIDNVLNEEVKARMWTRCADGQFRLCYGS 190
           RIF      + Q+  + L  E T+          + L +EV A        G F LC+  
Sbjct: 194 RIFLAARRQLKQMESQPLPGERTR----------STLQKEVHAAKSLAIIVGLFALCWLP 243

Query: 191 VCYICSYTFWSYWSRTCEPRDFKCWR*VNMFYCIVINHVDKVLNVY 328
           +  I  +TF+    R   P     W    M+  I+++H + V+N +
Sbjct: 244 LHIINCFTFFCSTCRHAPP-----WL---MYLAIILSHSNSVVNPF 281

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,322,192
Number of Sequences: 369166
Number of extensions: 706623
Number of successful extensions: 1957
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1957
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1670473860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01087

Planaria EST Database

DrC_01087

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail