Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_H17
(365 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9R187|EDAR_MOUSE Tumor necrosis factor receptor superfa... 29 3.0
sp|Q9UNE0|EDAR_HUMAN Tumor necrosis factor receptor superfa... 29 3.0
sp|P39109|YCFI_YEAST Metal resistance protein YCF1 (Yeast c... 29 3.0
sp|Q4R6B2|CS015_MACFA Protein C19orf15 homolog precursor 28 5.1
sp|O88281|EGFL3_RAT Multiple EGF-like-domain protein 3 prec... 28 5.1
sp|Q9W1P8|OR59B_DROME Putative odorant receptor 59b 28 6.6
sp|Q6ZRH7|CS015_HUMAN Protein C19orf15 precursor 28 6.6
sp|Q4IM48|MCH1_GIBZE Probable transporter MCH1 28 8.6
>sp|Q9R187|EDAR_MOUSE Tumor necrosis factor receptor superfamily member EDAR precursor
(Anhidrotic ectodysplasin receptor 1) (Ectodysplasin-A
receptor) (Ectodermal dysplasia receptor) (Downless)
Length = 448
Score = 29.3 bits (64), Expect = 3.0
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Frame = +1
Query: 70 CNYIF*TNLITS*MKKLKRECGPECADGQFRL------CYGSVCYTCL 195
C F ++T + ECGP C G + L YG VCY+CL
Sbjct: 93 CEGFFRATVLTPGDMENDAECGP-CLPGYYMLENRPRNIYGMVCYSCL 139
>sp|Q9UNE0|EDAR_HUMAN Tumor necrosis factor receptor superfamily member EDAR precursor
(Anhidrotic ectodysplasin receptor 1) (Ectodysplasin-A
receptor) (EDA-A1 receptor) (Ectodermal dysplasia
receptor) (Downless homolog)
Length = 448
Score = 29.3 bits (64), Expect = 3.0
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Frame = +1
Query: 70 CNYIF*TNLITS*MKKLKRECGPECADGQFRL------CYGSVCYTCL 195
C F ++T + ECGP C G + L YG VCY+CL
Sbjct: 93 CEGFFRATVLTPGDMENDAECGP-CLPGYYMLENRPRNIYGMVCYSCL 139
>sp|P39109|YCFI_YEAST Metal resistance protein YCF1 (Yeast cadmium factor 1)
Length = 1515
Score = 29.3 bits (64), Expect = 3.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 226 KFYPSKTKMCISMYSTRYHSTNEIVHRHILVHI 128
K +PS+ + + YSTRY ++V +HI +HI
Sbjct: 1264 KEWPSQGDIKFNNYSTRYRPELDLVLKHINIHI 1296
>sp|Q4R6B2|CS015_MACFA Protein C19orf15 homolog precursor
Length = 1159
Score = 28.5 bits (62), Expect = 5.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 246 CWR*VNMFYCIVINHVDTILDVYIFQ*NLFVNLNKLLYH 362
CW V FYC TI D + LF+ N+L+Y+
Sbjct: 281 CW--VGSFYCPQSGFTATIYDTVATESTLFIRQNQLVYY 317
>sp|O88281|EGFL3_RAT Multiple EGF-like-domain protein 3 precursor (Multiple epidermal
growth factor-like domains 6)
Length = 1574
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 115 KLKRECGPECADGQFRLCYGSVCYTCLYTFWSYWGRICEPET 240
K +CG +C +G++ L +C C + G C PET
Sbjct: 768 KTGEDCGADCPEGRWGLGCQEICPACEH------GASCNPET 803
>sp|Q9W1P8|OR59B_DROME Putative odorant receptor 59b
Length = 398
Score = 28.1 bits (61), Expect = 6.6
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Frame = -2
Query: 265 MLTYRQHLKSLVHKFYPSKTKMCISMYSTRYHSTNEIVH------RHILVHIL----ALT 116
+++Y Q K+ + + ++CI++Y ST + IL+ L A
Sbjct: 66 IISYVQEFKNFTPGEFLTSLQVCINVYGASVKSTITYLFLWRLRKTEILLDSLDKRLAND 125
Query: 115 SSFRRLSNLFKRCNYILSLFRF 50
S R+ N+ RCNY ++ F
Sbjct: 126 SDRERIHNMVARCNYAFLIYSF 147
>sp|Q6ZRH7|CS015_HUMAN Protein C19orf15 precursor
Length = 1159
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 246 CWR*VNMFYCIVINHVDTILDVYIFQ*NLFVNLNKLLYH 362
CW V FYC TI D + LF+ N+L+Y+
Sbjct: 281 CW--VGSFYCPHSGFTATIYDTIATESTLFIRQNQLVYY 317
>sp|Q4IM48|MCH1_GIBZE Probable transporter MCH1
Length = 572
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 121 KRECGPECADGQFRLCYGSVCYTCLYTFWS 210
K + GPE +D CYG CY T+W+
Sbjct: 516 KSKAGPEGSDRDDLFCYGEQCYA--PTYWA 543
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,847,192
Number of Sequences: 369166
Number of extensions: 744361
Number of successful extensions: 1798
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1798
length of database: 68,354,980
effective HSP length: 88
effective length of database: 52,098,300
effective search space used: 1719243900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)