Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_M15
(381 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5ZKU8|PK1IP_CHICK p21-activated protein kinase-interact... 28 5.0
sp|Q9Z7E8|FOLKP_CHLPN Folate synthesis bifunctional protein... 28 5.0
sp|Q8D2H4|LPXB_WIGBR Lipid-A-disaccharide synthase 28 6.5
sp|Q6P1L6|ZN343_HUMAN Zinc finger protein 343 28 8.5
>sp|Q5ZKU8|PK1IP_CHICK p21-activated protein kinase-interacting protein 1-like
(PAK1-interacting protein 1-like)
Length = 369
Score = 28.5 bits (62), Expect = 5.0
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -3
Query: 247 EVHKFYSSKTKMCMCRYSSRSHSTKEI 167
E+ +FYS ++ C+C + +R + K+I
Sbjct: 218 EIIRFYSCDSQKCLCEFKARENRIKDI 244
>sp|Q9Z7E8|FOLKP_CHLPN Folate synthesis bifunctional protein [Includes:
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
pyrophosphokinase
(7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase)
(HPPK) (6-hydroxymethyl-7,8-dihydropterin
pyrophosphokinase) (PPPK); Dihydropteroate synthase
(DHPS) (Dihydropteroate pyrophosphorylase)]
Length = 450
Score = 28.5 bits (62), Expect = 5.0
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = +1
Query: 79 KDVITSFEQIDNVLNEKVKARMWTRCADGQFLLCYGSESYICTYT 213
++++ + +QI+ V+ ++ W+ +L YG ES+ C +T
Sbjct: 75 RELLVTIKQIEKVVGRAEESPPWSPRTIDVDILLYGDESFCCDHT 119
>sp|Q8D2H4|LPXB_WIGBR Lipid-A-disaccharide synthase
Length = 385
Score = 28.1 bits (61), Expect = 6.5
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +2
Query: 65 NLKKLRM*LHLLNKLITS*MKKLKRECGPDVPM---DNF 172
N+ L++ + ++N L+ +++KRE PD+P+ DNF
Sbjct: 220 NIFNLKILVPMVNSLLKKRFEEIKREVAPDLPITIFDNF 258
>sp|Q6P1L6|ZN343_HUMAN Zinc finger protein 343
Length = 599
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 253 SLEVHKFYSSKTKMCMCRYSSRSHSTKEIVHRHIWS 146
+L H+ S+ K +CR +S +K I++RH W+
Sbjct: 311 NLSRHQRTHSEEKPYLCRECGQSFRSKSILNRHQWT 346
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,317,471
Number of Sequences: 369166
Number of extensions: 731392
Number of successful extensions: 1987
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1987
length of database: 68,354,980
effective HSP length: 93
effective length of database: 51,174,625
effective search space used: 1688762625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)