Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_H14
(343 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8D2H4|LPXB_WIGBR Lipid-A-disaccharide synthase 33 0.20
sp|Q9H013|ADA19_HUMAN ADAM 19 precursor (A disintegrin and ... 29 3.0
sp|Q86WR7|CJ047_HUMAN Protein C10orf47 28 5.0
sp|O80948|MB23_ARATH Myrosinase binding protein-like At2g39330 28 5.0
sp|P37630|YHIM_ECOLI Inner membrane protein yhiM 28 5.0
sp|P18084|ITB5_HUMAN Integrin beta-5 precursor 28 8.6
sp|O35674|ADA19_MOUSE ADAM 19 precursor (A disintegrin and ... 28 8.6
sp|Q07441|ITB5_PAPCY Integrin beta-5 28 8.6
>sp|Q8D2H4|LPXB_WIGBR Lipid-A-disaccharide synthase
Length = 385
Score = 33.1 bits (74), Expect = 0.20
Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Frame = +2
Query: 32 NLKKLRM*LHLLNKLITS*MKKLKREYGPDVPV---DNFVCAMVACA 163
N+ L++ + ++N L+ +++KRE PD+P+ DNF ++AC+
Sbjct: 220 NIFNLKILVPMVNSLLKKRFEEIKREVAPDLPITIFDNFSYEVMACS 266
>sp|Q9H013|ADA19_HUMAN ADAM 19 precursor (A disintegrin and metalloproteinase domain 19)
(Meltrin beta) (Metalloprotease and disintegrin
dentritic antigen marker) (MADDAM)
Length = 956
Score = 29.3 bits (64), Expect = 3.0
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +1
Query: 115 TRCAGGQFRLCYGSVCYTCSYTFWSYWGRTCEPRDFKCWR*VNM 246
T C GGQ CY +C T WG P C+ VN+
Sbjct: 505 TPCEGGQ-AYCYNGMCLTYQEQCQQLWGPGARPAPDLCFEKVNV 547
>sp|Q86WR7|CJ047_HUMAN Protein C10orf47
Length = 435
Score = 28.5 bits (62), Expect = 5.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +1
Query: 40 ETKDVITSFEQIDNLLNEEVKARIWTRCAGGQFRLCYGSVCYTCSYTFWSYWGRTCEPRD 219
E KDV+ FE+ + L+E+ + + LC G VC CS + EP D
Sbjct: 57 EEKDVLLFFEETIDSLDEDFEEPV----------LCDGGVCCLCSPSLEESTSSPSEPED 106
>sp|O80948|MB23_ARATH Myrosinase binding protein-like At2g39330
Length = 459
Score = 28.5 bits (62), Expect = 5.0
Identities = 10/24 (41%), Positives = 20/24 (83%)
Frame = -3
Query: 113 HILALTSSFRRLSICSKDVITSLV 42
HI+A+ ++R +++C+ +VIT+LV
Sbjct: 76 HIIAVEGNYRGVALCATEVITNLV 99
>sp|P37630|YHIM_ECOLI Inner membrane protein yhiM
Length = 364
Score = 28.5 bits (62), Expect = 5.0
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +1
Query: 55 ITSFEQIDNLLNEEVKARIWTRCAGGQFRLCYGSVCYTCSYTFW---SYWGRTC 207
IT + I L++ + AR+ A G +C G +CY+ W W RTC
Sbjct: 250 ITVLQGIYVLVSSDASARL----APGIILICLGMICYSIFSKVWLLALVWRRTC 299
>sp|P18084|ITB5_HUMAN Integrin beta-5 precursor
Length = 799
Score = 27.7 bits (60), Expect = 8.6
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Frame = +2
Query: 110 YGPDVPVDNFVCAM---VACAIHAHTHFGLTGVELVNLETSNVGDKLTCS 250
YGP DNF CA V C+ H H G +GD CS
Sbjct: 544 YGPFCECDNFSCARNKGVLCSGHGECHCG-----ECKCHAGYIGDNCNCS 588
>sp|O35674|ADA19_MOUSE ADAM 19 precursor (A disintegrin and metalloproteinase domain 19)
(Meltrin beta)
Length = 920
Score = 27.7 bits (60), Expect = 8.6
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = +1
Query: 115 TRCAGGQFRLCYGSVCYTCSYTFWSYWGRTCEPRDFKCWR*VN 243
T C GGQ CY +C T WG P C+ VN
Sbjct: 505 TPCEGGQ-AYCYNGMCLTYQEQCQQLWGPGARPALDLCFERVN 546
>sp|Q07441|ITB5_PAPCY Integrin beta-5
Length = 655
Score = 27.7 bits (60), Expect = 8.6
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Frame = +2
Query: 110 YGPDVPVDNFVCAM---VACAIHAHTHFGLTGVELVNLETSNVGDKLTCS 250
YGP DNF CA V C+ H H G +GD CS
Sbjct: 400 YGPFCECDNFSCARNKGVLCSGHGECHCG-----ECKCHAGYIGDNCNCS 444
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,848,855
Number of Sequences: 369166
Number of extensions: 715298
Number of successful extensions: 1890
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1890
length of database: 68,354,980
effective HSP length: 81
effective length of database: 53,391,445
effective search space used: 1708526240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)