Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_H07
(363 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q86WR7|CJ047_HUMAN Protein C10orf47 31 1.0
sp|O80948|MB23_ARATH Myrosinase binding protein-like At2g39330 28 5.1
sp|P00723|BGAL_KLULA Beta-galactosidase (Lactase) 28 6.6
sp|P30543|AA2AR_RAT Adenosine A2a receptor 28 8.7
>sp|Q86WR7|CJ047_HUMAN Protein C10orf47
Length = 435
Score = 30.8 bits (68), Expect = 1.0
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +3
Query: 51 SEETKDVITSFEQIDNVLNEEVKARMWTSCADGQFRLCYGSVCYICSYTFWSYWSRTCEP 230
+ E KDV+ FE+ + L+E+ + + LC G VC +CS + S EP
Sbjct: 55 THEEKDVLLFFEETIDSLDEDFEEPV----------LCDGGVCCLCSPSLEESTSSPSEP 104
Query: 231 RD 236
D
Sbjct: 105 ED 106
>sp|O80948|MB23_ARATH Myrosinase binding protein-like At2g39330
Length = 459
Score = 28.5 bits (62), Expect = 5.1
Identities = 10/24 (41%), Positives = 20/24 (83%)
Frame = -3
Query: 130 HILALTSSFRTLSICSKDVITSLV 59
HI+A+ ++R +++C+ +VIT+LV
Sbjct: 76 HIIAVEGNYRGVALCATEVITNLV 99
>sp|P00723|BGAL_KLULA Beta-galactosidase (Lactase)
Length = 1025
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 189 SYTFWSYWSRTCEPRDFKCWR*VNM 263
S TFW + EPRDFK W+ N+
Sbjct: 785 SITFWRPPTNNDEPRDFKNWKKYNI 809
>sp|P30543|AA2AR_RAT Adenosine A2a receptor
Length = 410
Score = 27.7 bits (60), Expect = 8.7
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +3
Query: 84 EQIDNVLNEEVKARMWTSCADGQFRLCYGSVCYICSYTFWSYWSRTCEPRDFKCWR*VNM 263
E+ + L +EV A + G F LC+ + I +TF+ R P W M
Sbjct: 214 ERTRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCSTCRHAPP-----WL---M 265
Query: 264 FYCIVINHVDKVLNVY 311
+ I+++H + V+N +
Sbjct: 266 YLAIILSHSNSVVNPF 281
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,689,113
Number of Sequences: 369166
Number of extensions: 642436
Number of successful extensions: 1782
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1782
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1725340155
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)