Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_A12
(284 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8D2H4|LPXB_WIGBR Lipid-A-disaccharide synthase 29 3.8
sp|Q9UW81|NOP1_NEUCR Opsin-1 (NR) 28 6.5
>sp|Q8D2H4|LPXB_WIGBR Lipid-A-disaccharide synthase
Length = 385
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +3
Query: 6 NKLITS*MKKLKRECGPDVPM---DNFVCAMVACAIHAYTHFGLTGVE 140
N L+ +++KRE PD+P+ DNF ++AC+ + G +E
Sbjct: 232 NSLLKKRFEEIKREVAPDLPITIFDNFSYEVMACSDFSIVTSGTATLE 279
>sp|Q9UW81|NOP1_NEUCR Opsin-1 (NR)
Length = 304
Score = 28.1 bits (61), Expect = 6.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 98 TRYHSTNEIVHRHIWSTFSL*LLHSG 21
T Y + E HR +W TF+L +L SG
Sbjct: 34 TEYQTLGETGHRTLWVTFALMVLSSG 59
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,284,504
Number of Sequences: 369166
Number of extensions: 574899
Number of successful extensions: 1271
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 68,354,980
effective HSP length: 64
effective length of database: 56,531,940
effective search space used: 1695958200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)